DY305127

Overview
NameDY305127
Unique NameDY305127
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1211
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305127 vs. ExPASy Swiss-Prot
Match: YJ2D_SCHPO (Uncharacterized transporter C4B3.13 OS=Schizosaccharomyces pombe GN=SPCC4B3.13 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.789e-17
Identity = 55/205 (26.83%), Postives = 103/205 (50.24%), Query Frame = -2
Query:  194 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELA 802
            G+ SA++T+  Q++G+  YEM+G++LQR   +L L    + +++     IL+FL + P     AA ++  ++    AYAL   +++FLQ Q I  P  YI    + +++ L+++ V+                 + W       +YI+K +  +  W GF+ +A        +L+    +M+C E W F+++   +G+L   ELA
Sbjct:  153 GIVSALDTVGTQSFGSGNYEMVGLHLQRILAILLLIQFPIFLIWWKIEGILLFLRQDPLTCMFAAKYMRVMMLASPAYALFEALKRFLQVQGIFHPVTYILAIVVPINIFLNYLFVWSPWVGFGFLGAPVAVALTLWSACAVLIIYIMKVNG-RQAWGGFSREALKNWGPLCRLAVPGVIMICSEYWAFELVTFASGVLGTTELA 356          
BLAST of DY305127 vs. ExPASy Swiss-Prot
Match: S47A2_PONAB (Multidrug and toxin extrusion protein 2 OS=Pongo abelii GN=SLC47A2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.318e-14
Identity = 56/212 (26.42%), Postives = 100/212 (47.17%), Query Frame = -2
Query:  182 LGMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 805
            +G+ SA +TL  Q++G+   + +G+ LQR A++L L  +    L++ ++ IL+   + P+++        +F+ GL P IF Y L   + K+LQ Q I  P          V+ + ++  V                S +   +   +YIV       TW G++ Q       FF L+  S +M+C+E W ++I   L GLL   +L+  ++
Sbjct:   86 VGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLFRQDPEVSRLTQDYVMIFIPGL-PVIFLYNL---LAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLMGLLSVVDLSAQAV 293          

HSP 2 Score: 22.3274 bits (46), Expect = 2.318e-14
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = -3
Query:  895 FSGHLANPELAAASLANTSIQV 960
            F GHL   ELA+ +LA   + V
Sbjct:   58 FCGHLGKVELASVTLAVAFVNV 79          
BLAST of DY305127 vs. ExPASy Swiss-Prot
Match: YL47_SCHPO (Uncharacterized transporter C323.07c OS=Schizosaccharomyces pombe GN=SPAC323.07c PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.093e-14
Identity = 58/209 (27.75%), Postives = 99/209 (47.37%), Query Frame = -2
Query:  182 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDSL 802
            G+ S+++TL  QA+GANK   + IYLQR  ++L +  I + ++++    ILIFL + P +A     ++   I     YA+   ++++LQAQ I  P  Y+      +++LL+++ V+                 ++W   I   +YI  S      W GF+ QA   L      S    +M+  E   +++  L AG L    LA  S+
Sbjct:  147 GVISSLDTLATQAFGANKPYNVAIYLQRCLLILAVLHIPVALIWLNLEHILIFLHQDPMVAHLCGRYMRVFILAAPGYAVFEALKRYLQAQGIFTPITYVLCFAAPLNILLNYLLVWHPTIGFGFLGAPVAVATTFWFQSICLILYICFSS-TPIPWPGFSRQALKNLSPMLHFSFHGMLMIVTEWAAYEMTSLGAGYLGTAPLASQSI 354          

HSP 2 Score: 21.9422 bits (45), Expect = 5.093e-14
Identity = 9/25 (36.00%), Postives = 15/25 (60.00%), Query Frame = -3
Query:  880 GHLANPELAAASLANTSIQVFAYGL 954
            GHL    LAA+SL+  +  + A+ +
Sbjct:  120 GHLGKEYLAASSLSTMTAAISAFSI 144          
BLAST of DY305127 vs. ExPASy Swiss-Prot
Match: S47A2_RABIT (Multidrug and toxin extrusion protein 2 OS=Oryctolagus cuniculus GN=SLC47A2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.446e-13
Identity = 55/201 (27.36%), Postives = 96/201 (47.76%), Query Frame = -2
Query:  212 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIA----SSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYEXXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLL 802
            G+ SA +TL  Q++G+   + +G+ LQR +++L L  +    L++ ++ IL+   + P ++      A +F+ GL P IF Y+L   + K+LQ Q IV P          V+ + ++  V                S ++     F++IV       TW G++ Q       F  L+  S +M+C+E W ++I   L GLL
Sbjct:  116 GLSSACDTLMSQSFGSPNKKHVGVILQRGSLILLLCCLPCWALFLNTQHILLLFRQDPAVSRLTQDYAMIFIPGL-PAIFLYSL---LAKYLQNQGIVWPQVLSGVVGNCVNGVANYALVSVLNLGVRGSAYANTISQFVQAAFLFLHIVLKKLHLETWEGWSSQCLRDWGPFLSLAIPSMLMMCVEWWAYEIGSFLMGLL 312          

HSP 2 Score: 20.7866 bits (42), Expect = 1.446e-13
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = -3
Query:  895 FSGHLANPELAAASLANTSIQV 960
            F GHL   ELA+ +L    + V
Sbjct:   87 FCGHLGKVELASVTLGVAFVNV 108          
BLAST of DY305127 vs. ExPASy Swiss-Prot
Match: YD338_YEAST (Uncharacterized transporter YDR338C OS=Saccharomyces cerevisiae GN=YDR338C PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.913e-13
Identity = 51/208 (24.52%), Postives = 99/208 (47.60%), Query Frame = -2
Query:  185 GMGSAVETLCGQAYGANKYEMLGIYLQRSAVLLTLTGILMTVLYVFSRPILIFLGESPDIASSAAVFVYGLIPQIFAYALNFPIQKFLQAQSIVAPSAYISTATLVVHLLLSWVAVYE--XXXXXXXXXXXXXXSWWIVVIAQFVYIVKSDRCKHTWRGFTVQAFSGLPSFFKLSAASAVMLCLETWYFQILVLLAGLLPNPELALDS 802
            G+ ++++TLC QAYG+ ++  +G++LQR      +  I   V++ +S P+L ++    ++ +  + F+  LI    AY     +++FLQAQ I     Y+ T    +++L+S+  V+                 ++W++      Y +  D  K  W GF+ +AF+       L+ +  +ML  E   +++L L +       LA  S
Sbjct:  284 GIATSLDTLCPQAYGSGRFYSVGVHLQRCIAFSLVIYIPFAVMWWYSEPLLSYIIPEKELINLTSRFLRVLILGAPAYIFFENLKRFLQAQGIFDAGIYVLTICAPLNVLVSYTLVWNKYIGVGFIGAAIAVVLNFWLMFFLLLFYALYIDGRK-CWGGFSRKAFTHWNDLGHLAFSGIIMLEAEELSYELLTLFSAYYGVSYLAAQS 490          

HSP 2 Score: 22.7126 bits (47), Expect = 6.913e-13
Identity = 10/20 (50.00%), Postives = 13/20 (65.00%), Query Frame = -3
Query:  895 GHLANPELAAASLANTSIQV 954
            GHL   ELAA SLA+ +  +
Sbjct:  258 GHLGKNELAAVSLASMTSNI 277          
The following BLAST results are available for this feature:
BLAST of DY305127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
YJ2D_SCHPO4.789e-1726.83Uncharacterized transporter C4B3.13 OS=Schizosacch... [more]
S47A2_PONAB2.318e-1426.42Multidrug and toxin extrusion protein 2 OS=Pongo a... [more]
YL47_SCHPO5.093e-1427.75Uncharacterized transporter C323.07c OS=Schizosacc... [more]
S47A2_RABIT1.446e-1327.36Multidrug and toxin extrusion protein 2 OS=Oryctol... [more]
YD338_YEAST6.913e-1324.52Uncharacterized transporter YDR338C OS=Saccharomyc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2CB12RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305127 ID=DY305127; Name=DY305127; organism=Citrus clementina; type=EST; length=1211bp
GGGAAAATTACCCATTTGAACAATCAAATGTAGCAAATGATGGCTTTGGC
AACCAAATGAAATCATGAGTGATTTGTGAAACTAATTTACTGAAAGTTAA
GGGGGGAGAGCTTAGATGCAATTATCAGAAAAGGGCGTGACCAAAAAGGG
AAGGAAAATAGTTTTCTGCTTACCAAATGGAAAGAGAGTCCAAAGCCAAC
TCCGGATTTGGTAACAAACCAGCCAATAGAACAAGAATCTGAAAGTACCA
CGTCTCCAAGCACAGCATCACAGCGGAGGCAGCCGATAGTTTGAAGAAGG
AAGGGAGACCAGAGAAGGCCTGAACAGTAAACCCACGCCACGTGTGCTTA
CACCTATCACTTTTAACAATATAAACAAACTGAGCAATCACAACAATCCA
CCAGGATAAGCTCAAGATCAGTGAGGCGCCAATCAAGCCAAGCCCGATTT
CGTAGACTGCAACCCAACTTAGCAGCAGATGCACCACTAACGTGGCCGTT
GAAATGTATGCACTTGGAGCCACTATGCTTTGTGCTTGCAAAAATTTTTG
GATTGGGAAGTTCAAGGCGTATGCAAAGATTTGGGGTATCAGGCCGTAGA
CAAAAACTGCCGCTGATGAGGCAATATCTGGCGACTCCCCTAGAAAAATC
AAAATTGGTCTCGAAAAGACGTATAGAACTGTCATTAAAATCCCCGTGAG
CGTCAGCAGAACCGCTGATCTTTGCAAATATATCCCTAGCATTTCATATT
TGTTTGCACCGTATGCTTGCCCACATAATGTCTCCACGGCACTTCCCATT
CCCAACTGTTAACAAAAGAATTTAATTATAAGAATATTAAAGTACCCTGT
GTGCGTGTGCGTATGTACTTACGTACCATGAGGCCGTAGGCGAAAACTTG
GATGCTGGTGTTTGCGAGGGAGGCGGCGGCAAGCTCAGGGTTTGCGAGGT
GGCCGGAAAAGGATTTGGGTGGACATAAACATGAAGTAGTTAATCATGTA
AACTATACCGGCTGGGAGCTGCTAGGGGAAAAAAGTAACTTTTAATTCAA
TCCCAAATAACCCCCCCCCGAAAACCTTTTCCCAAAGTGGAAAAACCCCC
AGGGGCCGGAAAAAAAAACCGGCCTTTCCAAACCCCCCTCCCCCCTTTTG
AAATTCCCCAGTTTTTTGTGGGCCCCCCCCAAAACCCGCCCCCCCCGGGG
GGGGGGAAAAA
back to top