DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NDUS7_MOUSE (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Mus musculus GN=Ndufs7 PE=1 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 6.263e-60
Identity = 106/148 (71.62%), Postives = 125/148 (84.46%), Query Frame = 3
Query:  312 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            AE+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQ+DVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQ+K+ R + L
Sbjct:   71 AEYVVTKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQADVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRKIKREQKL 218          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_METFK (NADH-quinone oxidoreductase subunit B OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=nuoB PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 8.179e-60
Identity = 108/142 (76.06%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + LD V+NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTTLDTVINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB2_ACIF5 (NADH-quinone oxidoreductase subunit B 2 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.822e-59
Identity = 107/142 (75.35%), Postives = 120/142 (84.51%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEALL+G++QLQKK+ R
Sbjct:   11 FVTTTIDTVVNWGRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSIVRGCDRIVPVDIYVPGCPPTAEALLFGLVQLQKKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ACIF2 (NADH-quinone oxidoreductase subunit B OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=nuoB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 5.302e-59
Identity = 104/142 (73.24%), Postives = 120/142 (84.51%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEAL++G++QLQKK+ R
Sbjct:   11 FVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQSDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGLIQLQKKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB1_ACIF5 (NADH-quinone oxidoreductase subunit B 1 OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 5.302e-59
Identity = 104/142 (73.24%), Postives = 120/142 (84.51%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + +D VVN+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEAL++G++QLQKK+ R
Sbjct:   11 FVTTSIDTVVNWSRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGLLFRPSPRQSDLMIVAGTLVNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGLIQLQKKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_RHORT (NADH-quinone oxidoreductase subunit B OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoB PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 1.181e-58
Identity = 106/147 (72.11%), Postives = 120/147 (81.63%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLY 758
            FV+S +D +VN+ R GS+WPM+FGLACCA+EM+H   ARYDLDRFG +FRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPT+EALLYG+LQLQKK+ R   LY
Sbjct:   38 FVLSNVDSLVNWARAGSLWPMTFGLACCALEMIHCACARYDLDRFGTVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALLYGVLQLQKKIKRTGALY 184          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_THIDA (NADH-quinone oxidoreductase subunit B OS=Thiobacillus denitrificans (strain ATCC 25259) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 2.015e-58
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +K D ++NY+R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL++GI+QLQKK+ R
Sbjct:   11 FVTTKADQLINYMRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIFGIIQLQKKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_THISH (NADH-quinone oxidoreductase subunit B OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.631e-58
Identity = 105/142 (73.94%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQ K+ R
Sbjct:   11 FVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQNKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_NEOSM (NADH-quinone oxidoreductase subunit B OS=Neorickettsia sennetsu (strain Miyayama) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.631e-58
Identity = 103/145 (71.03%), Postives = 125/145 (86.21%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRD 752
            ++++KLDD++N+ R GS+WPM+FGLACCAVEMMH  A+RYD+DRFG+IFRPSPRQSDVM+VAGTLTNKMAPALR+VYDQM +P++VISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG+L LQKK+NR+R+
Sbjct:   19 YLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVLCLQKKINRQRN 163          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_MAGSA (NADH-quinone oxidoreductase subunit B OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.631e-58
Identity = 103/142 (72.54%), Postives = 120/142 (84.51%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV++ +D VVN+ R GS+WPM+FGLACCAVEMMH G +RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPP+AEAL+YGILQLQKK+ R
Sbjct:   39 FVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQKKIRR 180          
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_MOUSE6.263e-6071.62NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_METFK8.179e-6076.06NADH-quinone oxidoreductase subunit B OS=Methyloba... [more]
NUOB2_ACIF51.822e-5975.35NADH-quinone oxidoreductase subunit B 2 OS=Acidith... [more]
NUOB_ACIF25.302e-5973.24NADH-quinone oxidoreductase subunit B OS=Acidithio... [more]
NUOB1_ACIF55.302e-5973.24NADH-quinone oxidoreductase subunit B 1 OS=Acidith... [more]
NUOB_RHORT1.181e-5872.11NADH-quinone oxidoreductase subunit B OS=Rhodospir... [more]
NUOB_THIDA2.015e-5873.94NADH-quinone oxidoreductase subunit B OS=Thiobacil... [more]
NUOB_THISH2.631e-5873.94NADH-quinone oxidoreductase subunit B OS=Thioalkal... [more]
NUOB_NEOSM2.631e-5871.03NADH-quinone oxidoreductase subunit B OS=Neoricket... [more]
NUOB_MAGSA2.631e-5872.54NADH-quinone oxidoreductase subunit B OS=Magnetosp... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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