DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_RICBR (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain RML369-C) GN=nuoB PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.222e-55
Identity = 97/147 (65.99%), Postives = 119/147 (80.95%), Query Frame = 3
Query:  321 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 761
            +++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   22 LLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_MAGSM (NADH-quinone oxidoreductase subunit B OS=Magnetococcus sp. (strain MC-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 1.222e-55
Identity = 99/147 (67.35%), Postives = 122/147 (82.99%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLY 758
            F+++  D +VN+ R  S+WPM+FGLACCAVEMM+ GA+RYDLDRFG++FR SPRQSDV++VAGTLTNKMAPALRKVYDQMP+PR+VISMGSCAN              CDRI+PVD+Y+PGCPPTAEA++YGI+QLQKK+NR   +Y
Sbjct:   14 FLLTSADKLVNWGRSMSMWPMTFGLACCAVEMMNAGASRYDLDRFGVVFRGSPRQSDVIIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRILPVDVYIPGCPPTAEAVMYGIMQLQKKINREGQVY 160          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NDUS7_DICDI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Dictyostelium discoideum GN=ndufs7 PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.723e-55
Identity = 101/147 (68.71%), Postives = 120/147 (81.63%), Query Frame = 3
Query:  315 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            E VISK+D +VN+ R GS+WPM+FGLACCAVEMM   AARYD+DRFG+I R SPRQSD ++VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRI+PVD+Y+PGCPPTAEA +YGILQLQKK+ R ++L
Sbjct:   26 EVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNL 172          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_RICAH (NADH-quinone oxidoreductase subunit B OS=Rickettsia akari (strain Hartford) GN=nuoB PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.556e-55
Identity = 96/148 (64.86%), Postives = 119/148 (80.41%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 761
            F+++K+DD++ + R  S+WPM+FGLACCAVEMM   ++RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM  P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG++QLQKK+ R     Y
Sbjct:   21 FLLTKIDDIIGWARAHSLWPMTFGLACCAVEMMQAASSRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAVPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKRTTGFKY 168          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG1 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoB PE=3 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 3.556e-55
Identity = 96/142 (67.61%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+ +  D V+N++R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG++QLQ+K+ R
Sbjct:   11 FITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ORITI (NADH-quinone oxidoreductase subunit B OS=Orientia tsutsugamushi (strain Ikeda) GN=nuoB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 4.645e-55
Identity = 96/148 (64.86%), Postives = 122/148 (82.43%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 761
            F+++ L+++V++ R  S+WPM+FGLACCA+EMM T  +RYD+DR+G++FRPSPRQ+DVM+VAGTLTNKMAPALR+VYDQM +P+WVISMGSCAN              CD+IVPVDIYVPGCPPT EALLYGILQLQKK+NR + + +
Sbjct:   22 FILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYDMDRYGMLFRPSPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVKF 169          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ORITB (NADH-quinone oxidoreductase subunit B OS=Orientia tsutsugamushi (strain Boryong) GN=nuoB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 4.645e-55
Identity = 96/148 (64.86%), Postives = 122/148 (82.43%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYY 761
            F+++ L+++V++ R  S+WPM+FGLACCA+EMM T  +RYD+DR+G++FRPSPRQ+DVM+VAGTLTNKMAPALR+VYDQM +P+WVISMGSCAN              CD+IVPVDIYVPGCPPT EALLYGILQLQKK+NR + + +
Sbjct:   22 FILANLENLVSWARTRSLWPMTFGLACCAIEMMQTAGSRYDMDRYGMLFRPSPRQADVMIVAGTLTNKMAPALRRVYDQMTEPKWVISMGSCANGGGYYHYSYSVVRGCDKIVPVDIYVPGCPPTPEALLYGILQLQKKINRTQQVKF 169          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMA (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup A GN=nuoB PE=3 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 7.922e-55
Identity = 96/142 (67.61%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMA ALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG++QLQ+K+ R
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMASALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_EHRRW (NADH-quinone oxidoreductase subunit B OS=Ehrlichia ruminantium (strain Welgevonden) GN=nuoB PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.035e-54
Identity = 102/146 (69.86%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+++KL D+++Y+    R  S+WPM+FGLACCAVEMMHT A++YDLDR+GI+FR SPRQ+DVM+VAGTLTNKMAPALRKVYDQM +PR+VISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+NR
Sbjct:   22 FMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINR 167          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_EHRRG (NADH-quinone oxidoreductase subunit B OS=Ehrlichia ruminantium (strain Gardel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.035e-54
Identity = 102/146 (69.86%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYI----RRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            F+++KL D+++Y+    R  S+WPM+FGLACCAVEMMHT A++YDLDR+GI+FR SPRQ+DVM+VAGTLTNKMAPALRKVYDQM +PR+VISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGIL LQ+K+NR
Sbjct:   22 FMVTKLSDLMSYVSSWARSNSLWPMTFGLACCAVEMMHTAASKYDLDRYGIMFRASPRQADVMIVAGTLTNKMAPALRKVYDQMTEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILCLQQKINR 167          
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_RICBR1.222e-5565.99NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_MAGSM1.222e-5567.35NADH-quinone oxidoreductase subunit B OS=Magnetoco... [more]
NDUS7_DICDI2.723e-5568.71NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_RICAH3.556e-5564.86NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_NEIG13.556e-5567.61NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_ORITI4.645e-5564.86NADH-quinone oxidoreductase subunit B OS=Orientia ... [more]
NUOB_ORITB4.645e-5564.86NADH-quinone oxidoreductase subunit B OS=Orientia ... [more]
NUOB_NEIMA7.922e-5567.61NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_EHRRW1.035e-5469.86NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]
NUOB_EHRRG1.035e-5469.86NADH-quinone oxidoreductase subunit B OS=Ehrlichia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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