DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB1_CHRVO (NADH-quinone oxidoreductase subunit B 1 OS=Chromobacterium violaceum GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.631e-58
Identity = 104/142 (73.24%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_POLSQ (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_POLNS (NADH-quinone oxidoreductase subunit B OS=Polynucleobacter necessarius (strain STIR1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADQLINWTRNGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHNSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQSKIAR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPL (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Lens) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 746
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPH (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 746
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPC (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Corby) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 746
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_LEGPA (NADH-quinone oxidoreductase subunit B OS=Legionella pneumophila (strain Paris) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 105/143 (73.43%), Postives = 119/143 (83.22%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 746
            F ++ ++ +V + R GS+WPM+FGLACCAVEMMH GAARYDLDRFGIIFRPSPRQSDVM+VAGTL NKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYGI+QLQ K+ R+
Sbjct:   11 FELTTVEKLVGWARSGSMWPMTFGLACCAVEMMHVGAARYDLDRFGIIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGIIQLQNKIRRK 153          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_DECAR (NADH-quinone oxidoreductase subunit B OS=Dechloromonas aromatica (strain RCB) GN=nuoB PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.436e-58
Identity = 103/142 (72.54%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++NY+R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YGI+QLQ K+ R
Sbjct:   11 FVTTTADKLINYMRTGSLWPMTFGLACCAVEMIHAGVSRYDLDRFGVVFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGIIQLQNKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_VARPS (NADH-quinone oxidoreductase subunit B OS=Variovorax paradoxus (strain S110) GN=nuoB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 4.488e-58
Identity = 102/142 (71.83%), Postives = 119/142 (83.80%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG++QLQ+K+ R
Sbjct:   11 FVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYGVIQLQQKIRR 152          
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_NITEU (NADH-quinone oxidoreductase subunit B OS=Nitrosomonas europaea GN=nuoB PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.862e-58
Identity = 106/142 (74.65%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + LD ++N+ R GS+WPM+FGLACCAVEMM TGA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIKR 152          
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_CHRVO2.631e-5873.24NADH-quinone oxidoreductase subunit B 1 OS=Chromob... [more]
NUOB_POLSQ3.436e-5872.54NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_POLNS3.436e-5872.54NADH-quinone oxidoreductase subunit B OS=Polynucle... [more]
NUOB_LEGPL3.436e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPH3.436e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPC3.436e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_LEGPA3.436e-5873.43NADH-quinone oxidoreductase subunit B OS=Legionell... [more]
NUOB_DECAR3.436e-5872.54NADH-quinone oxidoreductase subunit B OS=Dechlorom... [more]
NUOB_VARPS4.488e-5871.83NADH-quinone oxidoreductase subunit B OS=Variovora... [more]
NUOB_NITEU5.862e-5874.65NADH-quinone oxidoreductase subunit B OS=Nitrosomo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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