DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOUT (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain UTI89 / UPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOSM (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOSE (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain SE11) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOLU (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOLI (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain K12) GN=nuoB PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOLC (NADH-quinone oxidoreductase subunit B OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOL6 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O6 GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOL5 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOK1 (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O1:K1 / APEC GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_ECOHS (NADH-quinone oxidoreductase subunit B OS=Escherichia coli O9:H4 (strain HS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 5.903e-34
Identity = 68/143 (47.55%), Postives = 99/143 (69.23%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLNDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_ECOUT5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOSM5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOSE5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOLU5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOLI5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOLC5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOL65.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOL55.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOK15.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]
NUOB_ECOHS5.903e-3447.55NADH-quinone oxidoreductase subunit B OS=Escherich... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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