DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALHS (NADH-quinone oxidoreductase subunit B OS=Salmonella heidelberg (strain SL476) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALG2 (NADH-quinone oxidoreductase subunit B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALEP (NADH-quinone oxidoreductase subunit B OS=Salmonella enteritidis PT4 (strain P125109) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALDC (NADH-quinone oxidoreductase subunit B OS=Salmonella dublin (strain CT_02021853) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALCH (NADH-quinone oxidoreductase subunit B OS=Salmonella choleraesuis GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALAR (NADH-quinone oxidoreductase subunit B OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_SALA4 (NADH-quinone oxidoreductase subunit B OS=Salmonella agona (strain SL483) GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.007e-33
Identity = 68/143 (47.55%), Postives = 98/143 (68.53%), Query Frame = 3 
Query:  324 ISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL D+VN+ R+ SIWP +FGL+CC VEM+ +  A +D+ RFG  + R SPRQ+D+MVVAGT   KMAP ++++YDQM +P+WVISMG+CAN               D+ +PVD+Y+PGCPP  EA +  ++ LQ+ + + R
Sbjct:   39 MGKLHDMVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACAN-SGGMYDIYSVVQGVDKFIPVDVYIPGCPPRPEAYMQALMLLQESIGKER 180
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PROAC (NADH-quinone oxidoreductase subunit B OS=Propionibacterium acnes GN=nuoB PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.315e-33
Identity = 63/143 (44.06%), Postives = 102/143 (71.33%), Query Frame = 3 
Query:  312 AEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 737
            A  V++ ++ +V ++R+ S WP++ GLACCA+EM+  G  R D  R+G  +FR SPRQ+D+M+V+G ++ KMAP +R++YDQMP+P+WVISMG+CA+              CD IVPVD+Y+PGCPP+ + L+  + ++++++
Sbjct:   10 AGIVMTSMEAIVGWLRKTSFWPLTMGLACCAIEMISYGGPRADAARWGHEVFRASPRQADLMIVSGRVSQKMAPVVRQLYDQMPEPKWVISMGACAS-SGGIFNNYAVVQGCDHIVPVDVYLPGCPPSPDMLIDAVFKIREQI 151
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUBCD_PELCD (NADH-quinone oxidoreductase subunit B/C/D OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoBCD PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.717e-33
Identity = 65/143 (45.45%), Postives = 101/143 (70.63%), Query Frame = 3 
Query:  321 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRR 746
            +++ LDD +N+ R+ S+WPM FGL+CC VEMM +   R+DL RFG  + R +PR++D+MV+AGT   KMA ++ +VY++M +P+WVI+MGSCAN               ++++PVD+Y+PGCPP  EA + G++ LQ+K+ R+
Sbjct:   10 ILTTLDDAINWGRKNSMWPMFFGLSCCFVEMMGSMTPRFDLARFGAEVLRGTPREADLMVIAGTPFKKMAASMLRVYEEMANPKWVIAMGSCAN-SGGMYDVYSVMQGVNQVLPVDVYIPGCPPRPEAFMQGLMTLQEKIARK 151
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NDHK_PROMA (NAD(P)H-quinone oxidoreductase subunit K OS=Prochlorococcus marinus GN=ndhK PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.243e-33
Identity = 62/140 (44.29%), Postives = 98/140 (70.00%), Query Frame = 3 
Query:  321 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCA-NXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKM 737
            +++ LDD+ N+ R  S+WP+ +G ACC +E      +R+D DRFG++ R SPRQ+D+++VAGT+T KMAPAL ++Y+QMPDP++VI+MG+C                  D+++PVD+Y+PGCPP  EA+   +++L+KK+
Sbjct:   35 ILTSLDDLHNWARLSSLWPLLYGTACCFIEFAALIGSRFDFDRFGLVPRSSPRQADLLIVAGTVTMKMAPALVRLYEQMPDPKYVIAMGACTITGGMFSADSTTAVRGVDKLIPVDLYLPGCPPRPEAIFDAVIKLRKKV 174
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_SALHS1.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALG21.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALEP1.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALDC1.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALCH1.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALAR1.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_SALA41.007e-3347.55NADH-quinone oxidoreductase subunit B OS=Salmonell... [more]
NUOB_PROAC1.315e-3344.06NADH-quinone oxidoreductase subunit B OS=Propionib... [more]
NUBCD_PELCD1.717e-3345.45NADH-quinone oxidoreductase subunit B/C/D OS=Pelob... [more]
NDHK_PROMA2.243e-3344.29NAD(P)H-quinone oxidoreductase subunit K OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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