DY305130

Overview
NameDY305130
Unique NameDY305130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1261
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPK (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain KT2440) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPG (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain GB-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEPF (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEP1 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEF5 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   39 MGKLEDVLSGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 184
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEE4 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas entomophila (strain L48) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 70/147 (47.62%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+YVPGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLRGAVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFVKMAPIIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYVPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAE (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEAB (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEA8 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain LESB58) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
[Close]
BLAST of DY305130 vs. ExPASy Swiss-Prot
Match: NUOB_PSEA7 (NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain PA7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 3.239e-32
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = 3 
Query:  324 ISKLDDV----VNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGI-IFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRR 749
            + KL+DV    VN+ R+ S+WP +FGL+CC VEM     A +D+ RFG  + R SPRQ+D MV+AGT   KMAP ++++Y+QM +P+WVISMGSCAN               D+ +PVD+Y+PGCPP  EA L G++ LQ+ + + R
Sbjct:   40 MGKLEDVLNSTVNWGRKNSLWPYNFGLSCCYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKMAPVIQRLYEQMLEPKWVISMGSCAN-SGGMYDIYSVVQGVDKFLPVDVYIPGCPPRPEAFLQGLMLLQESIGQER 185
The following BLAST results are available for this feature:
BLAST of DY305130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_PSEPK3.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPG3.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEPF3.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEP13.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEF53.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEE43.239e-3247.62NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAE3.239e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEAB3.239e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEA83.239e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]
NUOB_PSEA73.239e-3246.94NADH-quinone oxidoreductase subunit B OS=Pseudomon... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2CC07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305130 ID=DY305130; Name=DY305130; organism=Citrus clementina; type=EST; length=1261bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTT
GTCTGATGAAATGTCCATGTAAAGGGAGAGATTATTTTCCGCTGTTTTTA
AACATACGTCCTTGAAAAGGCCTTATTGTGGGGCTAACACCAATATTTCA
TGAATTGGAACCTTTGGTTCTCCGGGCCTTGCCTACACCGAATTATGGTC
CCTGGAAAAAATTATTTTGAAAGGCTTAAAAAAAAAAAAAAAAAAACCCC
CAGGGGGGGGGCCCCGGGAACCCAATTCCCCCCAAAAAGGGGGTTCTTAA
TAAAAATTTCCCTGGGGGCGCCCCTTTTTTAAACACGGTCCTGGGACGGG
GGAAAAAAAACCCTGGGCGCTATTACCCAAAATTTTAAAATCCCCCCCTT
GTAGACCCCCCCACCCCCCCCCCTTTTTTTCCCCCCCCGCGGGGGGGGGG
GGATAAAAAAA
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