DY305185

Overview
NameDY305185
Unique NameDY305185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length945
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 190.274 bits (482), Expect = 1.395e-47
Identity = 100/208 (48.08%), Postives = 141/208 (67.79%), Query Frame = 2
Query:  137 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCSS 760
            EYDYLFK++LIGDSGVGKS LL RF+ + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK+DL   RA+  E A+++A+  G+ F+ETSA +A NVE+AF  + + I      K   + +PA +N +   T+ + G   A  K  CCS+
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTENRAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASI------KERMASQPAGNNARP-PTVQIRGQPVAQ-KNGCCST 203          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 3.107e-47
Identity = 101/211 (47.87%), Postives = 135/211 (63.98%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA------PSNIKEGQTIVVGGASEANTKKPCC 754
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY+ I          A      P +    Q++ VGG S  N    CC
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGG-SGGNQGGNCC 212          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 4.058e-47
Identity = 101/207 (48.79%), Postives = 138/207 (66.67%), Query Frame = 2
Query:  137 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCCS 757
            EYDYLFK++LIGDSGVGKS LL RF  + +     STIGV+F  RT++ +G+TIK QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV +WL E+  +A  N+  +++GNK DL   R V+ E  ++ A+  G+ F+ETSA +A NVEKAF T+  EI      K+  + +PA +N  +  T+ + G   A  +  CCS
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAENRVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEI------KNRMASQPA-TNASKPATVQMRGQPVAQ-QSSCCS 202          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.542e-46
Identity = 101/206 (49.03%), Postives = 136/206 (66.02%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEG-----QTIVVGGASEANTK 742
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H+ SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIYR I ++ L       + IK G      T V   AS+ N++
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI-QQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSR 207          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.630e-46
Identity = 102/214 (47.66%), Postives = 141/214 (65.89%), Query Frame = 2
Query:  137 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPA----PSNI--KEGQTIVVGGASEANTKKPCCSS 760
            E+DYLFK++LIGDS VGKS  L RF  + +     STIGV+F  RT++VEG+T+K QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV +WL E+  +A+ ++  +++GNK DL   RAV T  AQ+YA+  G+ F+ETSA E+INVE+AF  + + I     KKS +  + A    PSN+   +G+ I      E      CCS+
Sbjct:    4 EFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAI-----KKSKAGSQAALERKPSNVVQMKGRPI----QQEQQKSSRCCST 208          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.630e-46
Identity = 91/192 (47.40%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 706
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRS 196          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.630e-46
Identity = 91/192 (47.40%), Postives = 133/192 (69.27%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKK---SLSSGEPAPSNIKEGQT 706
            YDYLFK++LIGDSGVGK+ LL RF+ + F     STIG++F  RT++++G+ IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +HA S++  M++GNK D+   R V+ E  +  A   G+ F+ETSA  + NVE+AF T+  +I   +++K   S SSG   P  I E ++
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITESRS 196          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.486e-46
Identity = 94/205 (45.85%), Postives = 135/205 (65.85%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTKKPCC 754
            YDYL K++LIGDSGVGKS LL RF+ + F     +TIG++F  RT+++EG+ IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  HA  ++  M+IGNK D+   + V +   +S A+  G+ F+ETSA  +INVE+AF ++  +    I K+ + +    P  ++ G  +   GA+  N KK CC
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKD----IKKRMIDTPNEQPQVVQPGTNL---GANN-NKKKACC 208          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.486e-46
Identity = 91/171 (53.22%), Postives = 122/171 (71.35%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISK 652
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H+ SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+A+     EIYR I +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173          
BLAST of DY305185 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.486e-46
Identity = 97/201 (48.26%), Postives = 131/201 (65.17%), Query Frame = 2
Query:  140 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSNIKEGQTIVVGGASEANTK 742
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + ++G+ IK QIWDTAGQE +R+IT +YYRGA GALLVYD+T+  TF +++ WL++ R H++SN+VIM+IGNK+DL+  R V  E+ +++A   GL F+ETSA  A NVE+AF     EIY  I +        A + IK G       A+ A  +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEA-NGIKIGPQHAATNATHAGNQ 202          
The following BLAST results are available for this feature:
BLAST of DY305185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RBD2A_ARATH1.395e-4748.08Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RAB2_LYMST3.107e-4747.87Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RIC1_ORYSJ4.058e-4748.79Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB2B_HUMAN1.542e-4649.03Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPTM1_MAIZE2.630e-4647.66GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB8B_RAT2.630e-4647.40Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_MOUSE2.630e-4647.40Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8A_DICDI4.486e-4645.85Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB2B_MOUSE4.486e-4653.22Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2A_PONAB4.486e-4648.26Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH2DC11RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305185 ID=DY305185; Name=DY305185; organism=Citrus clementina; type=EST; length=945bp
GATCAAAATCACAGTTTCCGGTTCTACGCTTTAAATTCATCTTCACTTCT
TCAACTGAAGAAGCGGTCGTCTCTCATTTTTAATTTGTTATCTAAAGATA
TATATATAATTATAAATGGCGAGGAGACCGGACGAGGAATACGATTACTT
GTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGCAAGTCGAATTTAC
TCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACTATT
GGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAATAAA
AGCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAACCA
GTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTATGACGTGACG
AAACCAACAACATTTGAAAATGTGAGCCGATGGCTGAAGGAACTGAGGGA
CCACGCAGACTCCAACATTGTGATCATGATGATTGGCAATAAGACTGATC
TGAAACACCTCCGAGCTGTTGCCACAGAGGATGCCCAAAGCTATGCTGAG
AGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAATGT
CGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCAGCA
AGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAAACATCAAAGAAGGA
CAGACTATCGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCTTG
TTGCTCTTCATCCTAAAGATGGGTCTGTCTTCTTTGTTTATCTCAATTTC
TTCCCATTTTGTCGTGTCGGGCTTCCAAGTTAAATCTTTCATTCTCTCAA
TGGTTTATTGTTAAGCTTCTATTATTTGTTGTTAACAATGTCAAATTTGA
ATTATTCTCCTCATTTTGTGGTGTGAAATCAGAAATTACTTTTGG
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