DY305208

Overview
NameDY305208
Unique NameDY305208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT1A4_MOUSE (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Mus musculus GN=Atp1a4 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 4.746e-15
Identity = 49/141 (34.75%), Postives = 83/141 (58.87%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITNIMWRNLLIQASY-QVSVLLVL 655
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  + S  +PL  + +L ++L  D + A++LA E P   +M R P  P    + N    N LI  +Y Q+ ++  L
Sbjct:  736 KADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIILSIPLPLGTITILCIDLGTDMVPAISLAYESPESDIMKRLPRNPKTDNLVN----NRLIGMAYGQIGMIQAL 872          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT1A4_RAT (Sodium/potassium-transporting ATPase subunit alpha-4 OS=Rattus norvegicus GN=Atp1a4 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 8.095e-15
Identity = 43/113 (38.05%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGP 574
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  V S  +PL  + +L ++L  D + A++LA E P   +M R P  P
Sbjct:  732 KADIGIAMGITGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLLFIVLSIPLPLGTITILCIDLGTDMVPAISLAYETPESDIMKRLPRNP 844          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT1A1_BUFMA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Bufo marinus GN=ATP1A1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.095e-15
Identity = 46/140 (32.86%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITNIMWRNLLIQASYQVSVLLVL 655
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  ++   +PL  V +L ++L  D + A++LA E     +M R P  P +  + N     L+  A  Q+ ++  L
Sbjct:  727 KADIGIAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIADIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKKDKLVN---ERLISMAYGQIGMIQAL 863          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT1A_TORCA (Sodium/potassium-transporting ATPase subunit alpha OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.057e-14
Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITNIMWRNLLIQASYQVSVLLVL 655
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    V  +++  +PL  V +L ++L  D + A++LA E     +M R P  P    + N     L+  A  Q+ ++  L
Sbjct:  726 KADIGVAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIANVPLPLGTVTILCIDLGTDMVPAISLAYERAESDIMKRQPRNPKTDKLVN---ERLISMAYGQIGMIQAL 862          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT1A1_XENLA (Sodium/potassium-transporting ATPase subunit alpha-1 OS=Xenopus laevis GN=atp1a1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.057e-14
Identity = 46/140 (32.86%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITNIMWRNLLIQASYQVSVLLVL 655
            +ADIG+ MGI  ++V+K ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  +    +  +++  +PL  V +L ++L  D + A++LA E     +M R P  P    + N     L+  A  Q+ ++  L
Sbjct:  729 KADIGIAMGIAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVN---ERLISMAYGQIGMIQAL 865          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT12A_RAT (Potassium-transporting ATPase alpha chain 2 OS=Rattus norvegicus GN=Atp12a PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.057e-14
Identity = 40/110 (36.36%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 565
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  V+   +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  739 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIVAGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKP 848          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: AT12A_MOUSE (Potassium-transporting ATPase alpha chain 2 OS=Mus musculus GN=Atp12a PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.057e-14
Identity = 40/110 (36.36%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSP 565
            +ADIG+ MGI  ++ AK ++++++LDDNFAS+V  V  GR ++ N++K I + LT N+A L    +  V+   +P+  + +L+++L  D + ++ALA E     +M+R P
Sbjct:  738 KADIGIAMGIAGSDAAKNAADMVLLDDNFASIVTGVEEGRLIFDNLKKTIAYTLTKNIAELCPFLIYIVAGLPLPIGTITILFIDLGTDIIPSIALAYEKAESDIMNRKP 847          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: ATP4A_RAT (Potassium-transporting ATPase alpha chain 1 OS=Rattus norvegicus GN=Atp4a PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.381e-14
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITN 595
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P  P    + N
Sbjct:  736 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPRRDRLVN 855          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: ATP4A_RABIT (Potassium-transporting ATPase alpha chain 1 OS=Oryctolagus cuniculus GN=ATP4A PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.381e-14
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITN 595
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P  P    + N
Sbjct:  738 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 857          
BLAST of DY305208 vs. ExPASy Swiss-Prot
Match: ATP4A_PIG (Potassium-transporting ATPase alpha chain 1 OS=Sus scrofa GN=ATP4A PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 1.381e-14
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = 2
Query:  236 QADIGLTMGIQRTEVAK*SSNIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVASLVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGPIEPLITN 595
            +ADIG+ MGI  ++ AK ++++I+LDDNFAS+V  V  GR ++ N++K I + LT N+  L    +    S  +PL  + +L++ L  D   +++LA E     +MH  P  P    + N
Sbjct:  737 KADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVN 856          
The following BLAST results are available for this feature:
BLAST of DY305208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 132
Match NameE-valueIdentityDescription
AT1A4_MOUSE4.746e-1534.75Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A4_RAT8.095e-1538.05Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_BUFMA8.095e-1532.86Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A_TORCA1.057e-1433.57Sodium/potassium-transporting ATPase subunit alpha... [more]
AT1A1_XENLA1.057e-1432.86Sodium/potassium-transporting ATPase subunit alpha... [more]
AT12A_RAT1.057e-1436.36Potassium-transporting ATPase alpha chain 2 OS=Rat... [more]
AT12A_MOUSE1.057e-1436.36Potassium-transporting ATPase alpha chain 2 OS=Mus... [more]
ATP4A_RAT1.381e-1435.00Potassium-transporting ATPase alpha chain 1 OS=Rat... [more]
ATP4A_RABIT1.381e-1435.00Potassium-transporting ATPase alpha chain 1 OS=Ory... [more]
ATP4A_PIG1.381e-1435.00Potassium-transporting ATPase alpha chain 1 OS=Sus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH2DF06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305208 ID=DY305208; Name=DY305208; organism=Citrus clementina; type=EST; length=1268bp
GGATGGCACTAATGATGCTCCTGCCCTACATGAGGTGAAATGGATGTGAT
TCTACTTTGATATTTTATATTCTTACATGACAGTGTATTTAAAATTTCTG
TTTCATCGTCAATGTTTTTAAATCATCTGGACTACTAAAACAGTTTCGTA
TTGGAGTTAAACAAGTCAGGGTAGGTCCTGGCAACATGCACTAAATATGA
TATTATAGCTAACGGAATTAAGTCATTTTGAAATTCAAGCAGACATTGGT
CTGACAATGGGTATTCAAAGAACCGAGGTTGCTAAATAGAGCTCAAATAT
TATTATCTTGGACGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGG
GTCGTTCTGTATATGCAAATATCCAGAAATTCATCCAGTTTCAACTTACT
GTCAATGTCGCATCTCTCGTCATTAATTTTGTGGCTGCTGTTTCCTCTGG
TGATGTTCCCCTCAATGCAGTGCAGCTTCTCTGGGTTAACCTCATCATGG
ATACCCTGGGAGCCTTAGCCTTGGCTACTGAACCACCAACTGATCACCTG
ATGCATAGGTCCCCAGTTGGTCCAATAGAACCTCTTATAACTAATATAAT
GTGGAGGAATCTCTTAATACAGGCTTCCTACCAAGTAAGTGTCCTGCTTG
TCCTGAATTTTCAAGGGAAGAGGATTCTGAACCTGGAGAGTGATTCCGAT
GCCCATTCCAACACAGTATAAAATACTCAGATATTCAATTCTTTTGTCCT
TTGCCAGGTTAGTAAATTATCACGGAATACAATAATTTGTTAAGTTGAGC
TTCTGTTTGTTGTACTTTCAAGGGCAGCTTGATGCTGCTAGCATTGTCAC
TGCTAAAAATGTTTTTTTTACCGGCAATTGTTGGTTTGTAACTGTCATAA
AATTTGGATGGGCCTGACAACCACGGTAATTGGTTTGAAATTGCAAATCT
TTAATTGAATTTAATGCTCCGGAAGGCCTGATGAAAAAAAATATTTTACA
GGAGAAATTACCAAAAAACCGTTCTTTTTTTTGGGGGAAAAGTGGCACAA
AACCCCTTGGCCCCTTCCAAAAACTTATCCTTCCAGTTTTCCTTGGGGAA
AATTTTGGATTCAAAAAACCCAAACCATAATATTAGAAAAACCCCAGGGA
ATTTTTTTTTCCCCCCTTCTCTATTTTCTTTTTTACCTCCAGTTGGGGCC
CCCCCTCCTCCCCTTTTTTTTTGGGGGGGGAAAAAAATTAGAAAAAAACC
CAAGGGCGGGGGGGCGCC
back to top