DY305230

Overview
NameDY305230
Unique NameDY305230
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1113
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQP_ANOGA (Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP008842 PE=3 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 6.362e-21
Identity = 61/170 (35.88%), Postives = 88/170 (51.76%), Query Frame = -3
Query:  446 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 952
            G H NP  T GL+    VS+++   Y+V+Q +GA  G    +    S     GG G   +A G + G G+  E + TF+LV+ V    D +R+     V   APL IG ++   HLA I  TG  +NPARSFG AV+      + D W++WVGP +G  VA   ++   +
Sbjct:   77 GCHINPAVTIGLIVTADVSILKGAFYIVSQCIGAIAGAAVIKAATPSEV--VGGLGVTGIAPGLSTGQGVLIEALITFMLVFVVHGVCDNRRT----DVKGSAPLAIGLSITAGHLAAIKYTGASMNPARSFGPAVVMGN---YTDLWVYWVGPIVGGIVAGAVYRLFFK 237          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.085e-20
Identity = 65/180 (36.11%), Postives = 92/180 (51.11%), Query Frame = -3
Query:  452 IFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 988
            +F  V   A   GGH NP  TFGL  GG+++++    Y +AQ LGA  G    +         +G        G     G+  EII TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L   P +G  +NPARSFG AV       + + WI+WVGP +G  +A   ++Y+
Sbjct:   68 LFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCTGVATPTHG------LSGVGAFEGVVMEIIVTFGLVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILVAGPFSGGSMNPARSFGPAVASGD---YTNIWIYWVGPLVGGGLAGLVYRYV 234          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.085e-20
Identity = 63/180 (35.00%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  452 IFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFS-ATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 988
            +F  V   A   GGH NP   FG   GG ++L+R  +Y++AQ LG+            S    +G     L++G   G  L  EI+ TF LVYTV++ A DPK+     ++ ++AP+ IGF V    L     TG  +NPA SFG AV+     +W + W++W GP IG  +A   ++ +
Sbjct:   69 LFVAVSVGANISGGHVNPA-VFGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVTASSVPAFG-----LSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKG----NIGIIAPIAIGFIVGANILVGGAFTGASMNPAVSFGPAVV---SWSWSNHWVYWAGPLIGGGIAGLVYEVL 235          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQP_AEDAE (Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.085e-20
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = -3
Query:  446 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGG-GANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYILR 952
            G H NP  T GL+    +S+++   Y+V+Q +GA  G    +    S  +  GG G   +      G G+  E + TF+LV+ V    D +RS     +   APL IG ++   HL+ I  TG  +NPARSFG AV+      W DQW++WVGP +G  +A   ++   +
Sbjct:   78 GCHINPAVTIGLMITADISILKGAFYIVSQCVGAIAGAALIKAATPS--DVIGGLGVTGIDPRLTAGQGVMIEALITFILVFVVHGVCDNRRS----DIKGSAPLAIGLSITAGHLSAIKYTGASMNPARSFGPAVVMGN---WTDQWVYWVGPIVGGILAGAVYRLFFK 238          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.418e-20
Identity = 67/186 (36.02%), Postives = 94/186 (50.54%), Query Frame = -3
Query:  452 IFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGA------EIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYI 988
            +F  V   A   GGH NP  TFG   GG ++L R  LY +AQ LG+   C         +  R+  G   LA G    TG+        EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    L      G  +NPA SFG A++     +W+ QW++WVGP IG  +A   ++ +
Sbjct:   69 LFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVAC---------FLLRFSTGG--LATGTFGLTGVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS----LGTIAPIAIGFIVGANILVGGAFDGASMNPAVSFGPALV---SWSWESQWVYWVGPLIGGGLAGVIYEVL 236          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.158e-20
Identity = 62/167 (37.13%), Postives = 88/167 (52.69%), Query Frame = -3
Query:  455 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQY 952
            GGH NP  +FG + GG++S+IRA  Y +AQ LG+        +  +   N        ++ G   G     E++ TF L+YTV+ +A DPKR A    V  +APL IG  V    L   P  G  +NPA +FG +++      W   WIFWVGP +GA +AA  ++Y
Sbjct:   81 GGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAA----LVLRLVTNNMRPSGFHVSPGVGVGHMFILEVVMTFGLMYTVYGTAIDPKRGA----VSYIAPLAIGLIVGANILVGGPFDGACMNPALAFGPSLV---GWQWHQHWIFWVGPLLGAALAALVYEY 236          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: AQP2_SHEEP (Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.158e-20
Identity = 60/168 (35.71%), Postives = 82/168 (48.81%), Query Frame = -3
Query:  449 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 952
            G H NP  T   + G  VS +RA  Y+ AQ LGA  G             R     N L +    G  +  E+  T  LV  +F +TD +R  +  H      L IGF+V + HL  I  TG  +NPARS   A++  K   +DD W+FW+GP +GA VA+  + Y+L
Sbjct:   64 GAHINPAVTVACLVGCHVSFLRAVFYVAAQLLGAVAGAALLHEITPPAI-RGDLAVNALNNNSTAGQAVTVELFLTLQLVLCIFPSTDKRRGKQLGH----PALSIGFSVALGHLLGIHYTGCSMNPARSLAPAIVTGK---FDDHWVFWIGPLVGAIVASLLYNYVL 223          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.386e-20
Identity = 70/180 (38.89%), Postives = 92/180 (51.11%), Query Frame = -3
Query:  461 IFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGR-VFQKSYYNRYG--GGANELADGYNKGTGLGAEIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYH 988
            +F  V   A   GGH NP  TFGL  GG ++++    Y VAQ LGA   C   R V        +G  GG  EL        G+  EI+ TF LVYTV+ +A DPK+ +    +  +AP+ IGF V    LA  P +G  +NPARSFG AV       +   W++WVGP IG  +A   +
Sbjct:   67 LFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHGKAIPTHGVSGGTTEL-------EGVVFEIVITFALVYTVYATAADPKKGS----LGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAV---AAADFAGNWVYWVGPLIGGGLAGLVY 232          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 5.386e-20
Identity = 71/201 (35.32%), Postives = 97/201 (48.26%), Query Frame = -3
Query:  458 PGGGGVAFFGHWLGPLGGMIFFLVFGPAGFFGGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTG-LGA---EIIGTFVLVYTVF-SATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQ 1045
            P G   A   H  G     +F  V   A   GGH NP  TFG   GG ++L+R  LY +AQ LG+   C   +           GG    A G + G G L A   EI+ TF LVYTV+ +A DPK  +    +  +AP+ IGF V    LA    +G  +NPA +FG AV+      W + W++W GP +G  +A   ++
Sbjct:   55 PSGLVAAAVAHAFG-----LFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT--------GGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS----LGTIAPIAIGFIVGANILAGGAFSGASMNPAVAFGPAVV---SWTWTNHWVYWAGPLVGGGIAGLIYE 235          
BLAST of DY305230 vs. ExPASy Swiss-Prot
Match: MIP_CHICK (Lens fiber major intrinsic protein OS=Gallus gallus GN=MIP PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 5.386e-20
Identity = 61/168 (36.31%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  449 GGHFNPGWTFGLVWGGKVSLIRAFLYMVAQGLGAFCGCGFGRVFQKSYYNRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKEKAWDDQWIFWVGPFIGAFVAAFYHQYIL 952
            GGH NP  T   +   ++SL RA  Y++AQ LGA  G G       +   R   G + L      G G   E++ T   +  VF++ D +   R    P  A LP+GF++ + HL  IP TG G+NPARSF  AVI    + + + W+FW GP +GA +AA  ++  L
Sbjct:   64 GGHINPAITLAFLLASQLSLPRALGYLLAQLLGALAGAGVLYGVTPAAV-RGTLGLSALHPSVGPGQGTVVELLLTAQFILCVFASFDDRHDGR----PGSAALPVGFSLALGHLFGIPFTGAGMNPARSFAPAVI---TRNFTNHWVFWAGPLLGAALAALLYELAL 223          
The following BLAST results are available for this feature:
BLAST of DY305230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 159
Match NameE-valueIdentityDescription
AQP_ANOGA6.362e-2135.88Aquaporin AQPAn.G OS=Anopheles gambiae GN=AGAP0088... [more]
TIP22_ORYSJ1.085e-2036.11Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP1_MEDSA1.085e-2035.00Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
AQP_AEDAE1.085e-2034.12Aquaporin AQPAe.a OS=Aedes aegypti GN=AAEL003512 P... [more]
TIP11_ORYSJ2.418e-2036.02Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIPA_PHAVU3.158e-2037.13Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
AQP2_SHEEP3.158e-2035.71Aquaporin-2 OS=Ovis aries GN=AQP2 PE=2 SV=1[more]
TIP22_MAIZE5.386e-2038.89Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP11_ARATH5.386e-2035.32Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
MIP_CHICK5.386e-2036.31Lens fiber major intrinsic protein OS=Gallus gallu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3AB01RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305230 ID=DY305230; Name=DY305230; organism=Citrus clementina; type=EST; length=1113bp
GTTTTTTTTTACAAAAAGGTCATAGTTTTATTCACTAGAGTTGGGGATTA
ATTAACATTAACAACATAAATACACCACTTGAAATAAAGAAAAAGGAAAG
GATAAGAAAAATATAGAGAAATAGGATATATAAAAAACACCACCACCACT
TATAAACACACCCAAAGAAAAAAATTAAAATGGGATACCAAAATCCACCC
TTACACATAGATAAAGCATAGGCATAAAATGCATAATGTTCAAATATCTA
CAATTCAATAGCCCTCTAATTCAGCTCAAATTCAATGGCCCTCTAAAGAG
CTTGAAAAGAGATTTCTTAAAGGGCCTTCGTAACAGACTTGCACTCCTGA
TCATGCTGTAAATTTTTCACCTTGGAAGCACCAGACATCATATTTAAAGC
TTAAGCATTGCTCCTGAAGGATCCAAGAGCCTTAATGGCTGCTGCCCTGA
GAATGTATTGGTGGTAGAATGCAGCAACGAAAGCTCCAATGAATGGTCCA
ACCCAGAAGATCCATTGGTCATCCCAGGCTTTCTCCTTGTTGTAGATCAC
AGCAGCTCCAAAACTCCTAGCTGGGTTGATGCCGGTTCCGGTGATGGGGA
TGGTGGCCAAGTGAACCATGAACACAGCAAACCCAATGGGGAGTGGTGCC
AAGACCGGAACATGGGAGTCTCTTGCGCTCCTCTTAGGATCAGTGGCAGA
GAAAACAGTGTAGACAAGAACGAAAGTACCGATGATCTCAGCACCCAGTC
CGGTGCCCTTGTTGTATCCATCAGCTAGCTCATTGGCCCCACCTCCATAC
CTGTTGTAATATGATTTTTGGAAAACCCTTCCAAACCCACAACCACAGAA
TGCACCCAAGCCCTGTGCTACCATGTACAAAAAAGCTCGAATAAGCGACA
CTTTGCCCCCCCAGACCAATCCAAATGTCCAACCCGGGTTGAAATGTCCC
CCAAAAAACCCGGCTGGGCCAAAAACCAAAAAGAAAATCATGCCACCCAA
GGGCCCCAACCAATGCCCAAAAAAGGCCACACCCCCCCCCCCCGGATTAG
GATATTTCAATTTGGGAAATAATCTGGGCCTCTTTTATACCCCACCCCCA
GTCACAAAAAGGG
back to top