DY305247

Overview
NameDY305247
Unique NameDY305247
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1043
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7B_SCHPO (60S ribosomal protein L7-B OS=Schizosaccharomyces pombe GN=rpl7b PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 2.401e-59
Identity = 112/202 (55.45%), Postives = 150/202 (74.26%), Query Frame = 3
Query:  183 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAXKREDYINELIRRM 785
            R+LI  R + Y  EY   ++E I L R+A+ +G ++V  E KL+F++RIRGIN + PK +KI+QLLRL QI NG+F+K NKA   ML  VEPYVTYG PN K+V+ELIYKRG+GK+NKQRI L+DN+IIE ALG++ I+ +EDLIHEI TVGP+FK+A NFLWPF            +  H++EGGDA KR+++IN L+++M
Sbjct:   48 RELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFKQAANFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHINGLVQKM 249          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 4.528e-58
Identity = 105/204 (51.47%), Postives = 146/204 (71.57%), Query Frame = 3
Query:  183 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR--NHYVEGGDAXKREDYINELIRRMN 788
            R  I  R   + KEY+  ++ +I  KREAK  G +YV  + KL+F++RI+GIN + PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +V++L+YKRG+GK+NKQRIAL+DN+I+E  LG+ GI+ ++DLIHEI+TVGPHFK+ANNFLWPF            R   H+++GG    RE +IN+L++ MN
Sbjct:   41 RAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGAFGNREQFINKLVKAMN 244          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.535e-56
Identity = 106/203 (52.22%), Postives = 142/203 (69.95%), Query Frame = 3
Query:  180 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRM 785
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD   RED IN+L++RM
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRRSFINQGDWGNREDLINDLVKRM 247          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 5.535e-56
Identity = 106/203 (52.22%), Postives = 142/203 (69.95%), Query Frame = 3
Query:  180 TRKLIYNRTKQ-YAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRM 785
            TR+  + +T Q Y  EY    K L+   R+AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   +K LIYKRGY K+N QRI +T+N++IEQ LG+ GI  +EDLIHEI TVGPHFKEAN FLW F            R  ++  GD   RED IN+L++RM
Sbjct:   45 TRRAQWEKTAQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGGFIAKRKSFINQGDWGNREDLINDLVKRM 247          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 5.928e-50
Identity = 101/201 (50.25%), Postives = 134/201 (66.67%), Query Frame = 3
Query:  183 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXR-NHYVEGGDAXKREDYINELIRR 782
            RK  + R + +   Y + ++E IRL R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SV+ELIYKRG+GK+N QRIAL+DN++IE+ALG++ +I +ED+IHEI  VG HFKE   FLWPF            +  H+ EG  A    + INELI++
Sbjct:   47 RKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTLTPVKHSLMEKKVKHFNEGRKAGYCGEEINELIKK 247          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.760e-39
Identity = 86/197 (43.65%), Postives = 122/197 (61.93%), Query Frame = 3
Query:  201 RTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNH-YVEGGDAXKREDYINELIRRMN 788
            R + +  E+  ++ ++IR+K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSVK+LIYK+G   +    + LTDN+IIEQALG+H I+ +EDL++EI  VG HF+E   FL P             +   + EGGD   RED IN+LI +MN
Sbjct:   51 RPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDKINDLISKMN 247          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.730e-36
Identity = 79/198 (39.90%), Postives = 118/198 (59.60%), Query Frame = 3
Query:  195 YNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRMN 788
            + R + +  +   +Q++ +R++R         V  +  L F+IR+  I  V    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSV+ELI KRG  K+N + + LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E ++FL PF                 E G    R D IN+LIR++N
Sbjct:   49 FRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLLSVARHATRNRVGFRKEMGSPGYRGDRINQLIRQLN 246          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.417e-35
Identity = 80/200 (40.00%), Postives = 120/200 (60.00%), Query Frame = 3
Query:  189 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRMN 788
            L + R + +  +   ++++++RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G    R + IN+LIR++N
Sbjct:   47 LRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.124e-35
Identity = 80/200 (40.00%), Postives = 119/200 (59.50%), Query Frame = 3
Query:  189 LIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRMN 788
            L + R + +  +   ++++ +RL+R         +  +  L F++RI  I+ V    ++ +  LRL++IF+GVF+KV    L ML  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G HF+E + FL PF                 E G    R + IN+LIR++N
Sbjct:   47 LRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQLN 246          
BLAST of DY305247 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.491e-34
Identity = 78/202 (38.61%), Postives = 120/202 (59.41%), Query Frame = 3
Query:  183 RKLIYNRTKQYAKEYDEEQKELIRLKREAKLKGGFYVNPEAKLLFIIRIRGINAVDPKTKKILQLLRLRQIFNGVFLKVNKATLNMLHRVEPYVTYGYPNLKSVKELIYKRGYGKLNKQRIALTDNSIIEQALGQHGIICMEDLIHEILTVGPHFKEANNFLWPFXXXXXXXXXXXXRNHYVEGGDAXKREDYINELIRRMN 788
            ++L + R + +  +   + ++ +RL+R      G  V  +  L F++RI  I+ V    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSV+ELI KRG  K+  + I LTDN++IE+ LG+ G+IC+EDLIHEI   G +F+  + FL PF                 E G    R + IN+LIR++N
Sbjct:   46 KELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQLSVARHATKNRVGFLKEVGSPGYRGERINQLIRQLN 247          
The following BLAST results are available for this feature:
BLAST of DY305247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7B_SCHPO2.401e-5955.4560S ribosomal protein L7-B OS=Schizosaccharomyces ... [more]
RL7_CANGA4.528e-5851.4760S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL72_PARTE5.535e-5652.2260S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE5.535e-5652.2260S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO5.928e-5050.2560S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH2.760e-3943.6560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_MOUSE3.730e-3639.9060S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]
RL7L_PONAB1.417e-3540.0060S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN4.124e-3540.0060S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PIG3.491e-3438.6160S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AD05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305247 ID=DY305247; Name=DY305247; organism=Citrus clementina; type=EST; length=1043bp
GACGCCTCCGTGAAGAAGATAGATCTAAAAGACCTCTAAGAACAAATTGA
ACCAAAGAGATGGCTGAAGCAGCAGCTGTTGTGGTACCAGAGTCAGTGTT
GAAGAAGAAGAAGAGAGAGGAGGAATGGGCATTGGCCAAGAAGCAGGAGC
TGGAAGCCGCGAAGAAGAAGAAGGCTGAGACCCGGAAGCTCATTTACAAC
AGAACCAAACAGTACGCTAAAGAGTACGATGAAGAGCAAAAAGAACTCAT
TCGTTTGAAGCGTGAGGCCAAGCTTAAGGGTGGATTTTATGTCAACCCAG
AAGCTAAGCTTTTGTTCATTATCAGGATTCGCGGTATCAATGCTGTTGAT
CCAAAGACCAAGAAAATTTTGCAGCTTCTCCGTTTGAGACAGATTTTTAA
TGGTGTCTTTTTGAAAGTGAACAAAGCCACACTCAATATGCTGCACAGAG
TTGAGCCCTATGTAACATATGGGTACCCCAATTTAAAGAGTGTCAAAGAA
CTGATTTACAAGAGGGGTTACGGCAAATTAAATAAGCAGAGGATTGCTTT
GACCGACAATTCTATCATCGAACAGGCTCTTGGGCAGCATGGAATTATCT
GCATGGAAGATCTCATCCATGAGATTTTGACTGTTGGTCCTCACTTCAAG
GAGGCAAACAACTTCCTATGGCCCTTCAAGCTCAAGGCACCATTGGGTGG
CCTGAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCANGAAAAC
GTGAAGATTACATCAATGAGCTCATCAGAAGGATGAACTAAGCTTCTGCA
GAATATCCTACCCCTTTTGAAGAAGTTTTGATGTGATCAATATCTTAAAT
TTTTGGCTTTTATTGTTTCCTATTATTCCCAGCCTTTTCCCTGGAAGTTA
AGTAAAACACTTCTTATTTTTTATAACAGTGGCCCGTGTTGTTATTTTGG
GCTTCCAAACGGGGATATCCTTCCCAAATTTTATTTTTTTTTTTCCTTGG
TTTTTTAGTTTCCAGTTTTGAAAAGGGGGGGGATTCTTTTTTT
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