DY305261

Overview
NameDY305261
Unique NameDY305261
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_NITEU (NADH-quinone oxidoreductase subunit B OS=Nitrosomonas europaea GN=nuoB PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.901e-58
Identity = 106/142 (74.65%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + LD ++N+ R GS+WPM+FGLACCAVEMM TGA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTTSLDSLINWGRTGSMWPMTFGLACCAVEMMQTGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIKR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NDUS7_DICDI (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Dictyostelium discoideum GN=ndufs7 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.901e-58
Identity = 104/153 (67.97%), Postives = 123/153 (80.39%), Query Frame = 3
Query:  315 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDLYYWWTK 773
            E VISK+D +VN+ R GS+WPM+FGLACCAVEMM   AARYD+DRFG+I R SPRQSD ++VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRI+PVD+Y+PGCPPTAEA +YGILQLQKK+ R ++L  WW K
Sbjct:   26 EVVISKIDGLVNWARTGSLWPMTFGLACCAVEMMQGYAARYDMDRFGVIPRASPRQSDCIIVAGTLTNKMAPALRKVYDQMPNPRYVVSMGSCANGGGYYHYSYSVVRGCDRIIPVDVYIPGCPPTAEAFVYGILQLQKKIGREQNLLTWWRK 178          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFT (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=nuoB PE=3 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_XYLF2 (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M23) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTKTI 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_VESOH (NADH-quinone oxidoreductase subunit B OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 104/142 (73.24%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV   LD V+N+ R GS+WPM+FGLACCAVEMM  G++RYDLDRFGI+FRP+PRQSD+M+VAGTLTNKMAPALRKVYDQMP+P+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K+ R
Sbjct:   11 FVTMSLDRVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPKWVISMGSCANGGGYYHYSYAVIRGCDRIVPVDIYVPGCPPTAEALLYGIMQLQDKIRR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_STRMK (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain K279a) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            FV + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 FVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_STRM5 (NADH-quinone oxidoreductase subunit B OS=Stenotrophomonas maltophilia (strain R551-3) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 103/146 (70.55%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            FV + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDR+VPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 FVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_RALEJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain JMP134) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 103/142 (72.54%), Postives = 117/142 (82.39%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG++QLQ K+ R
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALIYGVIQLQNKIKR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB2_NITMU (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 7.707e-58
Identity = 106/142 (74.65%), Postives = 118/142 (83.10%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNR 743
            FV + LD V+N+ R GS+WPM+FGLACCAVEMM  GA+RYDLDRFGI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGI+QLQ K++R
Sbjct:   11 FVTTSLDSVINWGRTGSMWPMTFGLACCAVEMMQAGASRYDLDRFGIVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIIQLQNKIHR 152          
BLAST of DY305261 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFM (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.007e-57
Identity = 104/146 (71.23%), Postives = 121/146 (82.88%), Query Frame = 3
Query:  318 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNRRRDL 755
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YGILQLQKK+ R + +
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKIWRTQTI 182          
The following BLAST results are available for this feature:
BLAST of DY305261 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_NITEU5.901e-5874.65NADH-quinone oxidoreductase subunit B OS=Nitrosomo... [more]
NDUS7_DICDI5.901e-5867.97NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NUOB_XYLFT7.707e-5871.23NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLF27.707e-5871.23NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_VESOH7.707e-5873.24NADH-quinone oxidoreductase subunit B OS=Vesicomyo... [more]
NUOB_STRMK7.707e-5870.55NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_STRM57.707e-5870.55NADH-quinone oxidoreductase subunit B OS=Stenotrop... [more]
NUOB_RALEJ7.707e-5872.54NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB2_NITMU7.707e-5874.65NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_XYLFM1.007e-5771.23NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AF02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305261 ID=DY305261; Name=DY305261; organism=Citrus clementina; type=EST; length=1267bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACAGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAAGTGGCTCCCTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCAACTATTTTATCTGTG
GTCTAATGAAATGTCCATGTAAAAGGAAAAAAATATTTTCACCTGTTTAA
AAAAATACGTCCTGGAAAAGGGCTTTAGGTGGTGCTAAAACCAATAATTC
AAGAATTTGGAACCTTTGGTTCCCCGGCCTTGCCAACACCGAAACCTGTC
CCCTGGAAAAAATTATTTAAAAAGGGCCCAAAAAAAAAAAAAAAAAAAAC
CTCCAAGGGGGGGGGCCCGGGCCCCCAATTTCCCCCCCTAAAATGAGAAT
CAAAATAAAAATTCACCTGGCCCCTTCCTTTTTTAAAAACCTCCCGGGAC
CGGGGAAAAAAAACCCTGGGGGGTTTTACCCCAACAATTAAAACCTCCCT
TCCTGGCCCCCAAACCCATCCCCCCCTCTTTTCTCCCCCCCCCGCCCCGG
TGGGGCGACGTAAAAAA
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