DY306208

Overview
NameDY306208
Unique NameDY306208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: RPN11_ENCCU (26S proteasome regulatory subunit RPN11 OS=Encephalitozoon cuniculi GN=RPN11 PE=1 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 1.778e-83
Identity = 168/292 (57.53%), Postives = 198/292 (67.81%), Query Frame = 1
Query:   46 PPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSXLMSSNIVQTLGTMLDTVIF 921
            P    PT D+SE V ISSLALLKMLKHGRAG+P+EVMGLMLGEFVDEYTV+VVDVFAMPQSGT V+VE+VD +FQ  M+ +LK TGR E VVGWYHSHPGFGCWLS VDI+TQQSFE L +RAVAVVVDPIQSVKGKVVIDAFRLI+ Q  +LG EPRQ TSN+G+L  P++ ++IHGLN+HYYS  I  R                W D L L   D  SK      +E L L   Y KA +EE  L  +   +A VGR D ++ L E     +  N + +L   +   IF
Sbjct:    8 PDDGEPTSDASETVQISSLALLKMLKHGRAGIPLEVMGLMLGEFVDEYTVKVVDVFAMPQSGTNVTVESVDPIFQMEMMSILKATGRHETVVGWYHSHPGFGCWLSTVDISTQQSFEKLCKRAVAVVVDPIQSVKGKVVIDAFRLIDNQLGVLGGEPRQVTSNIGYLKTPTLISIIHGLNKHYYSFNITCRKNDFEQKMLLNLHRKTWADNLKLG--DVRSKR-----EEALKLIESYGKAFEEEKNLAGKNPDMAKVGRIDYRRRLLEKCEESIMENTIYSLLYSIHRYIF 292          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: YPT5_CAEEL (Uncharacterized protein F37A4.5 OS=Caenorhabditis elegans GN=F37A4.5 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 9.449e-77
Identity = 148/291 (50.86%), Postives = 193/291 (66.32%), Query Frame = 1
Query:   70 DSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMML-----GQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELP------PEKLAIANVGRQDAKKHLEEHVSXLMSSNIVQTLGTMLD 909
            D+SE V ISSLALLKML+H R+G+P+EVMGLMLG+FVD+YT+ V DVFAMPQSGT V+VE+VD V+QT  +D+LK  GR E VVGWYHSHPGFGCWLS VD+NTQQSFEAL+ RAVAVVVDPIQSVKGKV++DAFR +NP  + +       EPRQTTSNLGHL KPS+ +++HGL   YYS+ + YR                W D L +  +    K  E+  + +  L   +NK + E  E P        +  +   G+ +AK+ L+   S L++ ++   L  M++
Sbjct:   24 DTSETVNISSLALLKMLRHARSGIPLEVMGLMLGDFVDDYTINVTDVFAMPQSGTSVTVESVDPVYQTKHMDLLKLVGRTENVVGWYHSHPGFGCWLSSVDVNTQQSFEALHPRAVAVVVDPIQSVKGKVMLDAFRSVNPLNLQIRPLAPTAEPRQTTSNLGHLTKPSLISVVHGLGTKYYSLNVAYRMGSNEQKMLMCLNKKSWYDQLNMSTYSELEKKQEEKFKSINKLIAVFNKDIDEVKEKPIADKKGKTQEEVKKFGKINAKQQLQMITSSLLNDSLCHQLTAMIN 314          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.080e-30
Identity = 74/183 (40.44%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQ-TTSNLGHLNKPSIQALIHGLNRHYYSIAINY 615
            + + IS+LALLKM+ H R+G  +EVMGLMLG+ V++ T+ V+D FA+P  GT   V+ +A  + + T  ++  K+ GR E  VGWYHSHPG+GCWLSG+D++TQ   +   +  VA+VVDP+++V  GKV + AFR          +EP +  T  L  +    +        + YY + I+Y
Sbjct:   50 KDIKISALALLKMVMHARSGGTLEVMGLMLGK-VEDNTMIVMDAFALPVEGTETRVNAQAQAYEYMTAYMEAAKEVGRMEHAVGWYHSHPGYGCWLSGIDVSTQMLNQTYQEPFVAIVVDPVRTVSAGKVCLGAFRTYPKGYKPPNEEPSEYQTIPLNKIEDFGVHC------KQYYPLEISY 225          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_USTMA (COP9 signalosome complex subunit 5 OS=Ustilago maydis GN=RRI1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.788e-28
Identity = 65/137 (47.45%), Postives = 93/137 (67.88%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF-VDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 477
            ++V IS++AL+KM+ H R+G   E+MGLM G+  V+  T+ V+D FA+P  GT   V A +  ++     LD  K+ GR E VVGWYHSHPG+GCWLSG+D+NTQ++ +      VA+V+DP +++  GKV I AFR
Sbjct:   59 QKVRISAVALIKMVMHARSGGIYEIMGLMQGKIDVENRTLYVMDSFALPVEGTETRVNAQNEAYEYMVQYLDHSKEVGRLENVVGWYHSHPGYGCWLSGIDVNTQRTNQQFQDPFVAIVIDPNRTISSGKVDIGAFR 195          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.210e-28
Identity = 89/290 (30.69%), Postives = 143/290 (49.31%), Query Frame = 1
Query:   91 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQ-TTSNLGHLNKPSIQALIHGLNRHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKA------------VQEEDELPPEKLAIANVGRQDAKKHLEEHVSXLMSSNIVQTLGTMLDT 912
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR          + P +  T  L  +    +        + YY++ + Y                 W + L+      ++   E T  ++ +L+ K  ++            ++  D    +KLA A    +D+ K   E +  LMS  I   L   ++T
Sbjct:   55 VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFRTYPKGYKPPDEGPSEYQTIPLNKIEDFGVHC------KQYYALEVTYFKSSLDRKLLELLWNKYWVNTLSSSSLLTNA---EYTTGQVFDLSEKLEQSEAQLGRGSFMLGLESHDRKSEDKLAKAT---RDSCKTTIEAIHGLMSQVIKDKLFNQINT 331          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 6.210e-28
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   91 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 125.176 bits (313), Expect = 6.210e-28
Identity = 64/132 (48.48%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   91 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            IS+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 ISALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.111e-28
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   91 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   57 VSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 187          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.111e-28
Identity = 72/183 (39.34%), Postives = 111/183 (60.66%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQAL-IHGLNRHYYSIAINY 615
            + V IS++ALLKM+ H R+G  +EVMG+++G+ V+  T+ ++D FA+P  GT   V A    ++     L+++KQTGR E  +GWYHSHPG+GCWLSG+D+ TQ   +  ++  + +V+DP ++V  GKV I AFR   PQ     + P +  S    +    I+   +H   + YYS+ I Y
Sbjct:   52 KHVKISAIALLKMVMHARSGGKLEVMGMLMGK-VENNTMIIMDSFALPVEGTETRVNAQVEAYEYMVEYLELIKQTGRLENALGWYHSHPGYGCWLSGIDVGTQSVNQQYSEPWLGIVIDPTRTVSAGKVEIGAFRTY-PQGY---KPPNEGPSEYQSIPLSKIEDFGVH--CKQYYSLEITY 227          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.059e-27
Identity = 63/132 (47.73%), Postives = 91/132 (68.94%), Query Frame = 1
Query:   91 ISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            +S+LALLKM+ H R+G  +EVMGLMLG+ VD  T+ ++D FA+P  GT   V+ +A  + +    ++  KQ GR E  +GWYHSHPG+GCWLSG+D++TQ   +   +  VAVV+DP +++  GKV + AFR
Sbjct:   55 LSALALLKMVMHARSGGNLEVMGLMLGK-VDGETMIIMDSFALPVEGTETRVNAQAAAYEYMAAYIENAKQVGRLENAIGWYHSHPGYGCWLSGIDVSTQMLNQQFQEPFVAVVIDPTRTISAGKVNLGAFR 185          
The following BLAST results are available for this feature:
BLAST of DY306208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RPN11_ENCCU1.778e-8357.5326S proteasome regulatory subunit RPN11 OS=Encepha... [more]
YPT5_CAEEL9.449e-7750.86Uncharacterized protein F37A4.5 OS=Caenorhabditis ... [more]
CSN5_DROME5.080e-3040.44COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
CSN5_USTMA2.788e-2847.45COP9 signalosome complex subunit 5 OS=Ustilago may... [more]
CSN5_XENLA6.210e-2830.69COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_MOUSE6.210e-2848.48COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_HUMAN6.210e-2848.48COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_XENTR8.111e-2847.73COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_DICDI8.111e-2839.34COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_DANRE1.059e-2747.73COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96CG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306208 ID=DY306208; Name=DY306208; organism=Citrus clementina; type=EST; length=1023bp
CGATTGCAAAGAATGTTCGCTGGTGCCGGTGGCGCCTTGGGTCACCCGCC
ACCAGACTCCCCGACTCTTGATTCATCGGAGCAGGTCTACATCTCCTCAC
TCGCGCTCCTCAAGATGCTCAAACACGGTAGAGCTGGTGTGCCCATGGAG
GTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGAGTACACAGTTCGGGT
TGTTGATGTGTTTGCTATGCCACAAAGTGGAACTGGTGTTAGTGTTGAAG
CTGTTGATCATGTGTTCCAGACTAACATGCTTGACATGCTCAAGCAGACT
GGAAGACCAGAAATGGTTGTTGGATGGTATCACTCACATCCTGGATTTGG
TTGCTGGCTCTCTGGTGTTGACATAAACACACAGCAGAGTTTTGAAGCTT
TGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGTGAAA
GGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCATGAT
GCTTGGCCAAGAACCACGGCAGACAACTTCCAATCTTGGTCATCTTAATA
AGCCATCCATCCAAGCATTGATCCATGGCTTGAATAGACATTATTATTCT
ATTGCCATCAATTACAGGAAGAATGAACTTGAAGAAAAGATGCTACTAAA
TCTGCACAAGAAGAAATGGACTGATGGATTAACACTTCATCGCTTTGATT
GCCATTCCAAAACCAATGAACAGACTGTCCAGGAGATGTTAAATTTGGCT
GTCAAATATAACAAGGCAGTTCAAGAAGAAGACGAGCTGCCGCCAGAGAA
GCTGGCCATTGCTAATGTGGGAAGGCAAGATGCAAAGAAGCACCTTGAGG
AACATGTCTCCNACTTGATGTCCTCAAACATAGTTCAAACTTTGGGAACC
ATGCTTGATACAGTCATATTCTAGATGGTGGTTTGTTTTCTGTAGTTTCA
CTAGCTTCACTCTTGTTTGACTATTTGTATGGCATTTACCGTTTTGAATT
TGGGCTTTATAAATTTACATTTT
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