DY306208

Overview
NameDY306208
Unique NameDY306208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_EMENI (COP9 signalosome complex subunit 5 OS=Emericella nidulans GN=rri1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 5.257e-27
Identity = 90/283 (31.80%), Postives = 136/283 (48.06%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLN-RHYYSIAINYRXXXXXXXXXXXXXXXXWTDGLTLHRFDCHSKTNEQTVQEMLNLAVKYNKAVQEEDELPPEKLAIANVGRQ-------DAKKHLEEHVSXLMSSNIVQTL 894
            + V IS++ALLKM+ H R+G  +EVMGLM G ++   T  V D F +P  GT   V A D    +  + L   ++ GR E  VGWYHSHPG+GCWLSG+D++T Q  + ++   VAVV+DP +++  GKV I AFR          +E  +       LNK    A   G +  HYYS+ ++                  W   L+         T +   ++ML+L+ K  +  +  +  PP   A   V  Q       D ++ + E V  L+++ +   L
Sbjct:   49 KSVRISAVALLKMVMHARSGGSLEVMGLMQG-YILPNTFVVTDAFRLPVEGTETRVNAQDEANEYMVSYLQSCREAGRMENAVGWYHSHPGYGCWLSGIDVST-QDMQQMSGPFVAVVIDPERTISAGKVDIGAFRTFPKDYTPPKEEQEEDEYQTVPLNK----AEDFGAHASHYYSLEVSLFKSALDTEILSLLWNKYWVATLSQSPL---FTTRDYGSKQMLDLSQKTRRVARGIESNPPRGGAPTQVRDQQLERVVKDGQRIVSEEVKGLLAAEVKMQL 322          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.866e-27
Identity = 66/136 (48.53%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            ++V IS+LALLKM+ H R+G  +E+MGLM G+  D  T+ V+D FA+P  GT   V A D  ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ+  +   +  +AVV+DP ++V  GKV I AFR
Sbjct:   57 KRVKISALALLKMVVHARSGGTIEIMGLMQGK-TDGDTIIVMDAFALPVEGTETRVNAQDDAYEYMVEYSQTNKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQRLNQQHQEPFLAVVIDPTRTVSAGKVEIGAFR 191          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_CAEEL (COP9 signalosome complex subunit 5 OS=Caenorhabditis elegans GN=csn-5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.998e-26
Identity = 61/136 (44.85%), Postives = 91/136 (66.91%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            +Q+ IS++ALLKM  H + G  +E+MGL+ G  +D  +  ++DVFA+P  GT   V+ +A  + + T   +M    GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  VA+V+DP++++  GKV I AFR
Sbjct:   54 KQIKISAIALLKMTMHAKRGGNLEIMGLLQGR-IDANSFIILDVFALPVEGTETRVNAQAQAYEYMTVYSEMCDTEGRKEKVVGWYHSHPGYGCWLSGIDVSTQTLNQKFQEPWVAIVIDPLRTMSAGKVDIGAFR 188          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.998e-26
Identity = 64/136 (47.06%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQ--TNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            ++V+IS+LALLKM+ H R+G  +E+MGLM G+   + T+ V+D FA+P  GT   V A    ++         K  GR E VVGWYHSHPG+GCWLSG+D++TQ   +   +  +AVV+DP ++V  GKV I AFR
Sbjct:   57 KRVHISALALLKMVVHARSGGTIEIMGLMQGKTEGD-TIIVMDAFALPVEGTETRVNAQSDAYEYMVEYSQTSKLAGRLENVVGWYHSHPGYGCWLSGIDVSTQMLNQQYQEPFLAVVIDPTRTVSAGKVEIGAFR 191          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_DEBHA (COP9 signalosome complex subunit 5 OS=Debaryomyces hansenii GN=RRI1 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 3.408e-26
Identity = 60/136 (44.12%), Postives = 90/136 (66.18%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTG--VSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFR 477
            ++ YISSLAL KM  H ++G  +EVMG+M G+ +   ++ V+DV+ +P  GT   V+ +A  + +    L+  KQ GR E +VGWYHSHPG+GCWLSG+D+ TQ   +      +A+V+DP+++  +GKV I AFR
Sbjct:   61 KKTYISSLALCKMSVHAKSGGAIEVMGMMTGKIIKN-SIIVMDVYPLPVEGTETRVNAQAEGYEYMVQYLENSKQVGRDENIVGWYHSHPGYGCWLSGIDVATQSLNQNFQDPYLAIVIDPMKTEDQGKVEIGAFR 195          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_YARLI (COP9 signalosome complex subunit 5 OS=Yarrowia lipolytica GN=RRI1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.592e-26
Identity = 69/181 (38.12%), Postives = 102/181 (56.35%), Query Frame = 1
Query:   85 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDH--VFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGL-NRHYYSIAINY 615
            V +SS+AL+KM  H R+G  +EVMG+M G+ +   T  V+D + +P  GT   V A      F    L  LK  GR E +VGWYHSHPG+GCWLSG+D++TQ   +   +  +AVVVDP +++  GKV I AFR          + P++ T      + P  +A  +G  +  YY + +++
Sbjct:   56 VLVSSIALVKMAMHARSGGAIEVMGMMTGKILPN-TFVVMDCYPLPVEGTETRVNAQQEGIEFMVEYLQGLKDVGRRENIVGWYHSHPGYGCWLSGIDVDTQFQNQQFQEPFLAVVVDPNRTISAGKVEIGAFRTYPKDY----KPPKKATKQNQDQSVPLSKAKDYGAHSERYYELDVSF 231          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_NEUCR (COP9 signalosome complex subunit 5 OS=Neurospora crassa GN=rri-1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 7.592e-26
Identity = 60/136 (44.12%), Postives = 88/136 (64.71%), Query Frame = 1
Query:   85 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLI 483
            V ISS+A++KM+ H R+G  +EVMG+M G +++  T+ + D + +P  GT   V A D    +    L + ++  R E V+GWYHSHPG+GCWLSG+D+ TQ   +  N+  VAVV+DP ++V + KV I AFR I
Sbjct:   44 VRISSVAMIKMVMHARSGGNLEVMGMMQG-YIEGSTMVITDAYRLPVEGTETRVNAQDEANEYMVEYLRLCREENRLENVIGWYHSHPGYGCWLSGIDVGTQSLQQQFNEPFVAVVIDPDRTVSQNKVEIGAFRTI 178          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_GIBZE (COP9 signalosome complex subunit 5 OS=Gibberella zeae GN=RRI1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.691e-25
Identity = 71/183 (38.80%), Postives = 101/183 (55.19%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSV-KGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLN-RHYYSIAINY 615
            + V IS+ AL+KM  H R+G  +EVMGLM G +    T  V D F +P  GT   V A D    +    LD+ +  GR E VVGWYHSHPG+GCWLSG+D++T+   +      +AVV+DP +++  GKV I AFR     T     +P    ++ G    P  +A   G +   YYS+ +++
Sbjct:   50 KHVRISATALIKMTMHARSGGNLEVMGLMQG-YTQGDTFIVTDAFRLPVEGTETRVNAQDEANEYIVEYLDLCRAQGRQENVVGWYHSHPGYGCWLSGIDVDTEAMQQQFQDPFLAVVIDPDRTINSGKVDIGAFR-----TYPADYKPSGGVTSDGFQAVPLAKAAEFGAHASRYYSLEVSH 226          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_ASPFU (COP9 signalosome complex subunit 5 OS=Aspergillus fumigatus GN=csn5 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 6.427e-25
Identity = 70/183 (38.25%), Postives = 100/183 (54.64%), Query Frame = 1
Query:   79 EQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRH-YYSIAINY 615
            + + IS++AL+KM  H R+G  +EVMGLM G  + E T  V D F +P  GT   V A +    +  + L   +  GR E  VGWYHSHPG+GCWLSG+D+ T Q  + L    VAVV+DP +++  GKV I AFR            P++   +  +   P  +A   G   H YYS+ +++
Sbjct:   49 KSIRISAVALIKMTMHARSGGSLEVMGLMQGYILPE-TFVVTDAFRLPVEGTETRVNAQEEANEYMVSYLQSCRDAGRMENAVGWYHSHPGYGCWLSGIDVTT-QDMQQLGGPFVAVVIDPERTISAGKVDIGAFRTFPKDY----TPPKEGNEDEDYQTIPLSKAEDFGAYAHQYYSLEVSF 225          
BLAST of DY306208 vs. ExPASy Swiss-Prot
Match: CSN5_CRYNE (COP9 signalosome complex subunit 5 OS=Cryptococcus neoformans GN=RRI1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.870e-24
Identity = 60/134 (44.78%), Postives = 87/134 (64.93%), Query Frame = 1
Query:   85 VYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHV--FQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVK-GKVVIDAFR 477
            V IS++AL+KM+ H R+G   E+MG+M G+ V + T  ++DV A+P  GT   V A +    +  N      + G+ E++ GWYHSHPG+GCWLSG+D+NTQ + +  N   +AVV+DP ++V  GKV I AFR
Sbjct:   51 VKISAVALIKMVTHARSGGIYEIMGIMYGK-VRDGTFWIMDVAALPVQGTETRVNAGNEAMEYMVNFQTANAEAGKGELLRGWYHSHPGYGCWLSGIDVNTQLNNQKFNDPYLAVVIDPNRTVSAGKVEIGAFR 183          
The following BLAST results are available for this feature:
BLAST of DY306208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
CSN5_EMENI5.257e-2731.80COP9 signalosome complex subunit 5 OS=Emericella n... [more]
CSN5A_ARATH6.866e-2748.53COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_CAEEL1.998e-2644.85COP9 signalosome complex subunit 5 OS=Caenorhabdit... [more]
CSN5B_ARATH1.998e-2647.06COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5_DEBHA3.408e-2644.12COP9 signalosome complex subunit 5 OS=Debaryomyces... [more]
CSN5_YARLI7.592e-2638.12COP9 signalosome complex subunit 5 OS=Yarrowia lip... [more]
CSN5_NEUCR7.592e-2644.12COP9 signalosome complex subunit 5 OS=Neurospora c... [more]
CSN5_GIBZE1.691e-2538.80COP9 signalosome complex subunit 5 OS=Gibberella z... [more]
CSN5_ASPFU6.427e-2538.25COP9 signalosome complex subunit 5 OS=Aspergillus ... [more]
CSN5_CRYNE1.870e-2444.78COP9 signalosome complex subunit 5 OS=Cryptococcus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96CG07RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306208 ID=DY306208; Name=DY306208; organism=Citrus clementina; type=EST; length=1023bp
CGATTGCAAAGAATGTTCGCTGGTGCCGGTGGCGCCTTGGGTCACCCGCC
ACCAGACTCCCCGACTCTTGATTCATCGGAGCAGGTCTACATCTCCTCAC
TCGCGCTCCTCAAGATGCTCAAACACGGTAGAGCTGGTGTGCCCATGGAG
GTCATGGGTCTGATGCTGGGAGAGTTTGTGGACGAGTACACAGTTCGGGT
TGTTGATGTGTTTGCTATGCCACAAAGTGGAACTGGTGTTAGTGTTGAAG
CTGTTGATCATGTGTTCCAGACTAACATGCTTGACATGCTCAAGCAGACT
GGAAGACCAGAAATGGTTGTTGGATGGTATCACTCACATCCTGGATTTGG
TTGCTGGCTCTCTGGTGTTGACATAAACACACAGCAGAGTTTTGAAGCTT
TGAATCAAAGGGCTGTTGCTGTGGTTGTGGATCCAATCCAGAGCGTGAAA
GGGAAGGTAGTGATTGATGCCTTCCGCTTGATTAATCCCCAAACCATGAT
GCTTGGCCAAGAACCACGGCAGACAACTTCCAATCTTGGTCATCTTAATA
AGCCATCCATCCAAGCATTGATCCATGGCTTGAATAGACATTATTATTCT
ATTGCCATCAATTACAGGAAGAATGAACTTGAAGAAAAGATGCTACTAAA
TCTGCACAAGAAGAAATGGACTGATGGATTAACACTTCATCGCTTTGATT
GCCATTCCAAAACCAATGAACAGACTGTCCAGGAGATGTTAAATTTGGCT
GTCAAATATAACAAGGCAGTTCAAGAAGAAGACGAGCTGCCGCCAGAGAA
GCTGGCCATTGCTAATGTGGGAAGGCAAGATGCAAAGAAGCACCTTGAGG
AACATGTCTCCNACTTGATGTCCTCAAACATAGTTCAAACTTTGGGAACC
ATGCTTGATACAGTCATATTCTAGATGGTGGTTTGTTTTCTGTAGTTTCA
CTAGCTTCACTCTTGTTTGACTATTTGTATGGCATTTACCGTTTTGAATT
TGGGCTTTATAAATTTACATTTT
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