DY306213

Overview
NameDY306213
Unique NameDY306213
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1031
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306213 vs. ExPASy Swiss-Prot
Match: RPN1_ENCCU (26S proteasome regulatory subunit RPN1 OS=Encephalitozoon cuniculi GN=RPN1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.556e-13
Identity = 70/263 (26.62%), Postives = 121/263 (46.01%), Query Frame = 3 
Query:  210 ELDMLVERLTEDDKSLYKAALEAIKESIKTSTSSMTAVPKPLKFLRPHY---EKLCEAYEKWPAGDEKLSLADTLSVLGMTYSDEERLDTLKYRLLAPNKDIGSWGHEYMRHLALEIGSEYQNRMEKDADTDDINDLTRVLVPFFLSHNAEADAVDILSELEMIEDIKDFLDENTYSRVCLYMVSMVPLLAYPDNDRFVRTAHDIYRQYKQFTQAMCLAIRLHDMELIKSDFAAAEDKALKRQLAFHLARQKICLELEGGDAK 989
            EL ++VER+ + D  +   AL  + +  K+S S         ++L  +    E +C+  E    G++K  L D +S + +   DE +L  L YR+     D+  WGH Y++ L   I     N+M  D       D+ R  + F   HNAE +A+D L E+  IE + D++D + Y+R+ LY+  M    ++ D +  +     IY +    ++ +   IR    +       + ED+  K+Q  + LAR  +  E    + K
Sbjct:    5 ELKIIVERIQDPDIDIQNNALNMLFDVTKSSHSKSIDTIN-FQYLADNLDVLEDVCKRLE----GNKKRWLCDIISAICVV-DDERKL--LAYRVEGNIIDLKEWGHLYVKKLIGCIADVKNNKM--DFPFAKTRDVGRECIDFLFKHNAEFEAIDFLVEVGGIETVLDYVDTHNYNRIVLYLEDM---NSFVDLEEVIL---KIYLKMGDHSRYVVGLIRRQKSKEAIEYVRSIEDRDYKKQCLYILARCNLYYEASDPEEK 251
The following BLAST results are available for this feature:
BLAST of DY306213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RPN1_ENCCU2.556e-1326.6226S proteasome regulatory subunit RPN1 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA9DD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306213 ID=DY306213; Name=DY306213; organism=Citrus clementina; type=EST; length=1031bp
AATCCACCACACACCCTCTCACAAGCATCATGGCGAAGGAGGAGGAGAAG
AAGGCGCCCATCCAGGACAAGGGCAAGGGCAAGGCCGACGACGCAAAGCC
TGCAAACGGCGAGAAGGGCGAAAAGGCCGATGGCAAAGATGGCAAGAAGG
ACAATGACCTCGACCTTGCGCCCGAGGAGCTCAGTGAAGAGGACCAGAAG
CTCAAGGATGAGCTGGACATGCTGGTCGAGAGGTTAACAGAAGATGACAA
GTCGCTGTACAAGGCTGCGCTCGAGGCCATCAAGGAGAGCATCAAAACCA
GCACAAGCTCAATGACCGCTGTTCCCAAGCCTCTGAAGTTCCTCAGACCA
CACTACGAGAAGCTCTGCGAGGCATACGAGAAGTGGCCCGCTGGAGATGA
GAAGCTCTCACTCGCAGACACCCTCTCAGTTCTGGGTATGACATATTCTG
ATGAGGAGCGCCTGGACACACTCAAGTACCGTCTGCTTGCGCCAAACAAA
GACATCGGCTCGTGGGGTCATGAATACATGCGTCATCTGGCTCTGGAGAT
TGGCTCCGAGTACCAGAACCGCATGGAGAAGGATGCAGACACCGACGATA
TTAACGACCTGACTCGCGTGCTTGTACCCTTCTTCCTCTCTCACAACGCC
GAGGCCGATGCCGTCGACATTCTTTCAGAGCTCGAGATGATCGAGGACAT
TAAGGACTTCCTTGACGAGAACACCTACTCAAGAGTCTGCCTGTACATGG
TCTCGATGGTCCCTCTTCTTGCATACCCCGACAACGACCGCTTTGTGCGC
ACAGCCCACGACATTTACCGACAGTACAAGCAATTCACACAGGCCATGTG
CCTCGCCATCCGCCTNCACGATATGGAACTGATCAAGTCTGACTTCGCTG
CCGCCGAGGATAAGGCACTAAAGCGTCAGCTTGCCTTTCATCTTGCCCGT
CAGAAGATTTGCCTGGAGCTCGAGGGCGGAGATGCCAAGGAACTGACCTG
CAGGAATGCTTGAACAACACCCAGCTGCCTG
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