DY306871

Overview
NameDY306871
Unique NameDY306871
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY306871 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.047e-11
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:  232 KIHQFEEVATHNKTKDCWLIISGKVYDVSSFMDDHPGGDEVLISATGKDATNDFEDVGHSDSAREMMDKYY 444
            K++ ++EV+ HN+  D W+I+ GKVY+++ ++  HPGG+++L+ + G+DATN FE      S   M DK+Y
Sbjct:   13 KLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFE------SYHPMTDKHY 77
The following BLAST results are available for this feature:
BLAST of DY306871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
FAD5B_DICDI9.047e-1140.85Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3CB04RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306871 ID=DY306871; Name=DY306871; organism=Citrus clementina; type=EST; length=1247bp
TGTAAGCAAGCGGATCACAGATTCCTCACTTTGTTTGATTTCAAATTCTA
CTTCTTTAGAGTTTAAACATAAAAGGGTTTCTTTATTTGCTGTTGTTTTG
ATCAAAAAGTTCCCTTTTTGGTTGGTGTTTGGGTCGATTCTACATTTTTA
CTTTATTTTTTTGTGGGGTTTTTTTGAATTTGTTGAGGTTTTGTGTTTAG
CTGCAGTAGCGAACAAATGGCCTCAGATCCAAAGATTCACCAGTTCGAAG
AGGTCGCCACGCACAACAAAACTAAGGATTGCTGGCTTATTATTTCTGGC
AAGGTGTATGATGTGTCCTCGTTCATGGATGATCACCCTGGAGGAGATGA
GGTTTTGATTTCTGCAACTGGGAAAGATGCAACAAATGACTTTGAAGATG
TGGGTCACAGTGACTCCGCTAGGGAGATGATGGACAAGTACTATATTGGT
GACATTGATCCCTCAACTGTTCCTCGGAAACGTGCATATATTCCACCGCA
GCAACCTGCTTACAATCAAGACAAGACCCCTGAGTTCATTATTAAGATTC
TACAGATTCTTGTGCCGCTCTTGATATTGGGTTTAGCCTTTGCGGTCAGA
CACTATACCAAGAAAGAGTAGGTCACAATATCAATAAAATGAGTCATCTC
CGGAATGGGAAGCTGGTGATTTGCATGAGCTTAGTTCTAGGACATTTATC
TTTTATTTACTTTCCTATGGTGTTTGGTTTTGCTGAAATTGAATAGTGGT
TCGTAGTCCACCAAAAAACAAATTGTCTGGTTTCTCCTGAGTGTCTTGGT
TCCTATGTTTTTCATTGATGGGCATGGGAATATGGTAACTTTTATTGGAT
CCTTGGATGGGAAACAGGGGGCAAGTATTCCCTTCAAAAAAAAAAAAAAA
AAACTCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNAAATGTGGTCCAATT
ACAATTCCCTGGGCCCGCCGTTTTAAAACAACCGGGCTGGGGAAAACACC
GGGCGTATACCAAACTAAATCGCTGTTGAACAACACCCCCTTATTTCCCC
GCGGGTGGTAATAATACAAAAAAGCCCCCGCACCATATTCCCCCTTCCCC
CAACAATTTGCCCCCACCCCGAAGGGGGAAGAAGAAGGGCAAAATTATAA
CAGATTCATAAAAATTTTTGTTTTAAGAAACTTTCCTTATGGTATAAAAG
ATTTGTTATCTTATAAAAAATTAGACCTACCAGTTCTTTTTTCTTTT
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