DY306884

Overview
NameDY306884
Unique NameDY306884
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1222
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C2_SCHPO (Protein phosphatase 2C homolog 2 OS=Schizosaccharomyces pombe GN=ptc2 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.321e-19
Identity = 70/204 (34.31%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   78 AIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLV-ANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLL---------KQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRGS------ADNLTCVVVPVLANQG 629
            A+   +   D+  ++  + Q   +G TA+TA+ V  +++  AN GDSR V+ R G A  +S DHKP+   E+ RI  AGGF+ +    RV G LA+SRA GD            KQ V A P++    ID   EFLILA DG+WD  ++++ V  ++      Q  E   + LM       S       DN+T  +V  L  +G
Sbjct:   96 ALKSGFLAADNALMQDRDMQEDPSGCTATTALIVDHQVIYCANAGDSRTVLGRKGTAEPLSFDHKPNNDVEKARITAAGGFIDFG---RVNGSLALSRAIGDFEYKKDSSLPPEKQIVTAFPDVVIHNIDPDDEFLILACDGIWDCKSSQQVVEFVRRGIVARQSLEVICENLMDRCIASNSESCGIGCDNMTICIVAFLHGRG 296          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C2_CAEEL (Probable protein phosphatase 2C T23F11.1 OS=Caenorhabditis elegans GN=T23F11.1 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.321e-19
Identity = 74/221 (33.48%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   24 NLFSNLIRHPKFIS-DTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDP----EEAAKRLMQEAYQRG--SADNLTCVVVPVLANQ 626
            NL   ++   +F   + K AI   +   D +    E  ++  +G+TA   +     +   N GDSRAV    G A  +S DHKP    E +RI  AGG   W    RV G LA+SRA GD   K         Q V A P++  + +    EF++LA DG+WDV+TN+E V  ++      +DP    EE   R +    Q G    DN+T V+V +L  Q
Sbjct:   73 NLHKKVVAQKEFSEGNMKEAIEKGFLELDQQMRVDEETKDDVSGTTAVVVLIKEGDVYCGNAGDSRAVSSVVGEARPLSFDHKPSHETEARRIIAAGG---WVEFNRVNGNLALSRALGDFAFKNCDTKPAEEQIVTAFPDVITDKLTPDHEFIVLACDGIWDVMTNQEVVDFVREKLAEKRDPQSICEELLTRCLAPDCQMGGLGCDNMTVVLVGLLHGQ 290          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.031e-19
Identity = 68/200 (34.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   51 PKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLL-VANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSADNLTCVVV 608
            P+     + A+  A+   D++   S      D G + + A+ V  R L +A+ GDSRA++ R G+    + DH+P +  ER+RI DAGG V      RV G LAVSRA GD   K         Q V A+PE+         EF++LASDG+WD ++  +   ++    +   D E    +L+     +GS DN+TC+VV
Sbjct:  123 PQEPDGVRQALRSAFLQADAQL--SALWPRGDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTVR---RRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLRLGLDLELLCAQLLDTCLCKGSLDNMTCMVV 317          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C5_PARTE (Probable protein phosphatase 2C 5 OS=Paramecium tetraurelia GN=GSPATT00010582001 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.031e-19
Identity = 59/182 (32.42%), Postives = 103/182 (56.59%), Query Frame = 3
Query:  117 LKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLK---------QYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMI----KPIQDPEEAAKRLMQEAYQRGSA-----DNLTCVVV 608
            ++  N++   AG TA+ A+ VG  L VAN GDSR+ + R G    +S+DHKPD   E++RIE AGGFV      R  G L++SRA GD   K         Q + A P+++   + +S +FL++  DG+++   +++ +  +    K  Q+ ++A ++L+ +   + ++     DN+TC++V
Sbjct:  114 IRGVNDETSLAGCTANVALIVGKTLYVANAGDSRSFLNRDGKPFDMSKDHKPDDDQEKKRIERAGGFV---SDGRANGNLSLSRALGDLEYKKDSRFKPEEQIISALPDVKVTQLTASDKFLLMGCDGVFETWDHQQILNFVNQELKSSQNLQKATEKLLDQLLAKDTSLGTGCDNMTCILV 292          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.959e-19
Identity = 71/217 (32.72%), Postives = 106/217 (48.85%), Query Frame = 3
Query:   24 NLFSNLIRHPKFIS-DTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGD--------RLLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIK----PIQDPEEAAKRLMQEAYQRGS------ADNLTCVVVPVL 617
            NL   L ++P F   D  +A+  ++ + D   L  +      +G TA+  + VG++L  AN GDSR V+   G A  +S DHKP    E+ RI  AGGFV +    RV G LA+SRA GD           KQ V A P++    I    EF++LA DG+WD  T+++ +  ++         E+ A+ LM       +       DN+T  +V +L
Sbjct:   76 NLPQILEKNPDFQKGDFVNALKSSFLNADKAILDDDQFHTDPSGCTATVVLRVGNKLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFVDFG---RVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVRRGIVAGTSLEKIAENLMDNCIASDTETTGLGCDNMTVCIVALL 289          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C73_ORYSJ (Probable protein phosphatase 2C 73 OS=Oryza sativa subsp. japonica GN=Os11g0109000 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.171e-19
Identity = 59/195 (30.26%), Postives = 103/195 (52.82%), Query Frame = 3
Query:   33 SNLIRHPKFISDTKSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGGN-----AIAVSRDHKPDQTDERQRIEDAGGFV-----------MWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEA 566
            S+     + +S  K+     +   D +  +        +G+TA T +  GD L++AN GDSRAV+C   +     ++ ++ D KP+   E +RI ++ G V           MW       G LA++RAFGD  LK + ++  PE+    + +  +FL+LA+DG+WDV++N+E + ++    D  +AAK+L++ A
Sbjct:  120 SDTSNEKQLLSTWKNIFVKTFEDVDEDLRQHSGIDCICSGTTAVTVVRQGDHLIIANLGDSRAVLCTRDSKDRPISVQLTTDLKPNLPSEAERILNSKGRVFAMDDEPDVPRMWLPDQDAPG-LAMARAFGDFCLKSHGLICTPEVYYRKLSAKDDFLVLATDGIWDVLSNKEVIKIVSSATDHSKAAKQLVERA 313          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.171e-19
Identity = 57/157 (36.31%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  147 AGSTASTAIPVGDRLLVANEGDSRAVICRGGN-----AIAVSRDHKPDQTDERQRI-----------EDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEA 566
            +G+TA T +  G+ + VAN GDSRAV+    +     A+ ++ D KP+   E++RI           ++ G   +W       G LA+SRAFGD  +K+Y +V+ PE+ +  I +   F+ILASDG+WDV++N+EA+ ++    +  +AAKRL+++A
Sbjct:  176 SGTTALTIVRQGEVIYVANVGDSRAVLAMESDEGSLVAVQLTLDFKPNLPQEKERIIGCKGRVFCLDDEPGVHRVWQPDAETPG-LAMSRAFGDYCIKEYGLVSVPEVTQRHISTKDHFIILASDGIWDVISNQEAIEIVSSTAERPKAAKRLVEQA 331          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C60_ARATH (Probable protein phosphatase 2C 60 OS=Arabidopsis thaliana GN=At4g31860 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.171e-19
Identity = 65/173 (37.57%), Postives = 91/173 (52.60%), Query Frame = 3
Query:  144 DAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLL---------KQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQDPEEAAKRLMQEAYQRGSA---------DNLTCVVV 608
            ++GSTA  A+    +L VAN GDSR VI R   A  +SRDHKPD   E++RI  AGGF+  AG  RV G L +SRA GD            KQ V A P++    +    +FL+LA DG+WD +T+++ V  I    + E     + ++   R  A         DN+T ++V
Sbjct:  158 NSGSTACVAVVRDKQLFVANAGDSRCVISRKNQAYNLSRDHKPDLEAEKERILKAGGFI-HAG--RVNGSLNLSRAIGDMEFKQNKFLPSEKQIVTASPDVNTVELCDDDDFLVLACDGIWDCMTSQQLVDFIHEQLNSETKLSVVCEKVLDRCLAPNTSGGEGCDNMTMILV 327          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: PP2C1_CAEEL (Probable protein phosphatase 2C F42G9.1 OS=Caenorhabditis elegans GN=F42G9.1 PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 8.820e-19
Identity = 51/136 (37.50%), Postives = 81/136 (59.56%), Query Frame = 3
Query:  144 DAGSTASTAIPVGDRLLVANEGDSRAVICRGGNAIAVSRDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDR---------LLKQYVVADPEIQEEVIDSSLEFLILASDGLWDVVTNEEAVAMIKPI 524
            D+G+TA   +   D+++VAN GDSRAV+CR G A+ +S DHKP+   E  RI  AGG +      RV G L +SRAFGD          L +Q + A P+++ E +    EF+++A DG+W+ + +++ V  ++ +
Sbjct:  314 DSGTTACVCLVGKDKVIVANAGDSRAVLCRNGKAVDLSVDHKPEDEVETNRIHAAGGQI---EDGRVNGGLNLSRAFGDHAYKKNQELGLKEQMITALPDVKIEALTPEDEFIVVACDGIWNSMESQQVVDFVRDL 446          
BLAST of DY306884 vs. ExPASy Swiss-Prot
Match: P2C76_ORYSJ (Putative protein phosphatase 2C 76 OS=Oryza sativa subsp. japonica GN=Os11g0586100 PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 8.820e-19
Identity = 66/234 (28.21%), Postives = 111/234 (47.44%), Query Frame = 3
Query:   72 KSAIADAYSHTDSEFLKSENNQNRDAGSTASTAIPVGDRLLVANEGDSRAVICRGG--------------------------------------NAIAVSRDHKPDQTDERQRIEDAGGFVM-WAGTWRVGGVLAVSRAFGDRLLKQY-VVADPEIQE-EVIDSSLEFLILASDGLWDVVTNEEAVAMIKPIQ------------DPEEAAKRLMQEAYQRGSADNLTCVVVPV 614
            K ++  A    D  F K     N ++GSTA+  + V  +++ AN GDS+A +C                                         N   +++DH PD+ DER R+E AGG+V+ WAG  RV G LA+SRA GD   K+Y V+  PE+ E + + ++  FLI +SDG+++ +T ++   ++  ++                 A  ++  A ++G+ DN+  V+VP+
Sbjct:  224 KESLLRAVHDVDLTFSKEALRNNFESGSTAAVILIVDGQIIAANVGDSKAFLCSESHDSSIDKKTSVVSGKRRRKRNSNNRDDFALANYDGPFYNVKELTKDHHPDREDERSRVEAAGGYVLEWAGVHRVNGELALSRAIGDVPYKRYGVIPTPELTEWQSLSANDTFLIASSDGVFEKMTMQDVCDLMLRVKLGVNQELGSFAVTQRNLADYVVDLALEKGTTDNVAAVIVPL 457          
The following BLAST results are available for this feature:
BLAST of DY306884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 190
Match NameE-valueIdentityDescription
PP2C2_SCHPO2.321e-1934.31Protein phosphatase 2C homolog 2 OS=Schizosaccharo... [more]
PP2C2_CAEEL2.321e-1933.48Probable protein phosphatase 2C T23F11.1 OS=Caenor... [more]
PPMBL_MOUSE3.031e-1934.00Probable protein phosphatase 1B-like OS=Mus muscul... [more]
PP2C5_PARTE3.031e-1932.42Probable protein phosphatase 2C 5 OS=Paramecium te... [more]
PP2C3_SCHPO3.959e-1932.72Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C73_ORYSJ5.171e-1930.26Probable protein phosphatase 2C 73 OS=Oryza sativa... [more]
P2C73_ARATH5.171e-1936.31Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
P2C60_ARATH5.171e-1937.57Probable protein phosphatase 2C 60 OS=Arabidopsis ... [more]
PP2C1_CAEEL8.820e-1937.50Probable protein phosphatase 2C F42G9.1 OS=Caenorh... [more]
P2C76_ORYSJ8.820e-1928.21Putative protein phosphatase 2C 76 OS=Oryza sativa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CD01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306884 ID=DY306884; Name=DY306884; organism=Citrus clementina; type=EST; length=1222bp
GAGCTGCTGACCTTTTAAAACACAACCTCTTCAGCAATCTGATCAGGCAT
CCAAAGTTCATATCTGATACCAAATCGGCAATAGCTGATGCATACAGCCA
CACAGACTCGGAATTTCTGAAGTCAGAAAACAATCAAAACAGGGATGCTG
GATCTACTGCTTCCACTGCCATCCCTGTTGGTGATCGCTTACTTGTTGCA
AATGAGGGTGACTCCAGAGCTGTTATATGCAGGGGCGGTAATGCTATTGC
CGTATCGCGAGATCACAAACCAGACCAAACAGATGAGCGTCAACGGATTG
AGGATGCAGGAGGGTTTGTGATGTGGGCTGGAACTTGGAGAGTGGGAGGA
GTGCTTGCCGTTTCTCGCGCATTTGGTGACAGACTCTTGAAGCAGTATGT
TGTTGCTGATCCCGAAATTCAGGAGGAAGTTATTGACAGCTCCCTTGAGT
TTCTTATCCTTGCAAGTGATGGACTTTGGGATGTCGTCACAAATGAGGAA
GCTGTTGCGATGATCAAACCAATCCAGGATCCAGAGGAGGCAGCGAAGAG
GCTGATGCAGGAGGCATATCAGAGAGGCAGCGCAGACAACCTCACCTGTG
TCGTTGTTCCGGTCTTGGCCAATCAAGGTGGTCCACCCTTTCCCGGGCCC
GCATGAACATCCCTTCATAGCCACCGCTCTGCTTTTGTTCTCCACATCGG
GCACCCTTTCAGGGGGCCACAGGCTAGTAACCCTAGAAAAAATACAGTTC
CCTTGGACTTCTGAAATGAAAACAACCGCACCAAAAACCCTCCCCCCCGG
CGGTAAAGGGGTATAACCAAATAACCACCCTCTGGAAAAAAACGGGCCCG
CAAGTTAACATCCTCGTCCCCGCCCCCCCAAACGAACCCTAAAAGCGGGA
TGGAACCGCTGCTGTAAAAAAATGGGAAAGAACCTCCCCAAGATTGCATT
CACAAAACACAAAAAAAAAAAAACAACCCCAACATCCCTCTGCCCCACCG
CGGCCCAACCACCAACGCCCTCGCTCAAACTCTCTCTACGGGCCCCGACC
ACGCCGACCCTTCTCCCACCCAACAATACCCCTCTAGACACAACACCCCC
GCCCCACAAATTTCCTCTCAAGCCCCACAACGCACACCACCACCCCGCGG
ACGCCTCTGCCTCGGGCTCACTGCGCCCGCCCAGCACACGCCGCCCCCGG
TACGGTTCACCACTACCAAACA
back to top