EG026473

Overview
NameEG026473
Unique NameEG026473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:618..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A WFWMT Q PKPSCH VI  +W PSA +  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  GDNLDCYNQRPY
Sbjct:  224 VSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSA WFWMT Q PKPSCH VII  W PS+ +  AGR+PGYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  222 ISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRVPGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 324          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.619e-33
Identity = 59/103 (57.28%), Postives = 76/103 (73.79%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSAIWFWMT Q PKPSCH+VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  220 ISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.467e-33
Identity = 60/100 (60.00%), Postives = 76/100 (76.00%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 302
            +SFK+A+WFWMT Q PKPSCH+VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  233 VSFKTALWFWMTPQSPKPSCHDVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.467e-33
Identity = 62/103 (60.19%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSA WFWMT Q PKPSCH+VII  W PS  +  AGR+PG+GL TNIINGG+ECGQG N  V +RIGF+  +C   G+  G+NLDCYNQR Y       SM
Sbjct:  219 ISFKSAFWFWMTPQSPKPSCHDVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.620e-33
Identity = 58/103 (56.31%), Postives = 79/103 (76.70%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFK+A+WFWMT Q PKPSCH+VII  W PS+ +  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  226 ISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.620e-33
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 287
            +SFK+AIWFWMT Q  KPS H+VII  W PSA +  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG+NLDCYNQR +G
Sbjct:  157 ISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.300e-32
Identity = 62/99 (62.63%), Postives = 72/99 (72.73%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 296
            +SFK+AIWFWM  Q PKPSCH VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  235 ISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.698e-32
Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 320
            +SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  222 ISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.896e-32
Identity = 60/106 (56.60%), Postives = 78/106 (73.58%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 320
            +SFKSA+WFWMTAQ PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  221 ISFKSALWFWMTAQSPKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
The following BLAST results are available for this feature:
BLAST of EG026473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI3_ORYSJ2.005e-3363.83Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_GOSHI2.005e-3359.22Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHIC_SOLLC2.619e-3357.28Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI9_ORYSJ4.467e-3360.00Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_THECC4.467e-3360.19Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU7.620e-3356.31Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIQ_TOBAC7.620e-3363.16Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI6_POPTR1.300e-3262.63Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHIT_PHAVU1.698e-3256.60Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHI5_PHAVU2.896e-3256.60Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026473 ID=EG026473; Name=EG026473; organism=Citrus clementina; type=EST; length=476bp
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAT
TGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGCAAC
CGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGG
TGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGATGG
CACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTTAAT
AAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACAACT
AAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGACTGA
TCCAACATGGATCAATGAGTCTTCTC
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