EG026473

Overview
NameEG026473
Unique NameEG026473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:618..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 2.896e-32
Identity = 60/103 (58.25%), Postives = 73/103 (70.87%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFKSA WFWMT Q PKPSCH VII  W PS+ +  AGR  GYG+ TNIINGG+ECG+G N  V +RIGF+  +C   G+  G+NLDCYNQ P+G  +   SM
Sbjct:  200 ISFKSAFWFWMTPQSPKPSCHNVIIGAWSPSSSDRAAGRATGYGVITNIINGGLECGKGWNAQVEDRIGFYKRYCDILGVSYGNNLDCYNQSPFGNGVSVDSM 302          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.939e-32
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A+WFWMT Q  KPS H+VI   W PS  +  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCYNQRP+
Sbjct:  236 VSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 6.451e-32
Identity = 56/94 (59.57%), Postives = 73/94 (77.66%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            ++FK+AIWFWMT Q PKPSCH VI+ +W+PS  +  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCYNQR +
Sbjct:  218 IAFKAAIWFWMTPQSPKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.100e-31
Identity = 58/94 (61.70%), Postives = 72/94 (76.60%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMTAQ  KPSCH+VI  +W PSA + +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGDNLDCY+QR +
Sbjct:  151 VSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.201e-31
Identity = 59/94 (62.77%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMTAQ  KPSCH+VI+  W PSA +  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCYNQR +
Sbjct:  166 VSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 58/94 (61.70%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMT Q  KPS H+VII  W PSA + +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDCYNQR +
Sbjct:  157 ISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.132e-31
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 287
            +SFK+A+WFWMTAQ PKPS H+VI   W PS  +   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC NQRP+G
Sbjct:  152 VSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 9.315e-31
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A WFWMT Q PKPSCH V+  +W P+  +  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCYNQRP+
Sbjct:  228 VSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.217e-30
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            + FK+AIWFWMTAQPPKPS H VI  +W PS  +  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  172 VGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.589e-30
Identity = 56/94 (59.57%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  GDNLDCYNQRP+
Sbjct:  172 VSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
The following BLAST results are available for this feature:
BLAST of EG026473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_GOSHI2.896e-3258.25Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI2_ORYSJ4.939e-3261.70Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_BRANA6.451e-3259.57Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_SOLLC1.100e-3161.70Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ3.201e-3162.77Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_TOBAC7.132e-3161.70Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHID_SOLLC7.132e-3157.89Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI1_ORYSJ9.315e-3157.45Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_HORVU1.217e-3059.5726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE1.589e-3059.57Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026473 ID=EG026473; Name=EG026473; organism=Citrus clementina; type=EST; length=476bp
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAT
TGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGCAAC
CGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGG
TGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGATGG
CACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTTAAT
AAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACAACT
AAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGACTGA
TCCAACATGGATCAATGAGTCTTCTC
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