EG026473

Overview
NameEG026473
Unique NameEG026473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.710e-30
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 311
            +SFK+A WFWMT Q PKPSCH VI   W PS  + +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G+NLDC NQRP+G  L+  ++
Sbjct:  212 ISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.540e-30
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMT Q  KPS H+VI   W PSA + +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC NQR +
Sbjct:  226 VSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 6.038e-30
Identity = 55/95 (57.89%), Postives = 69/95 (72.63%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 287
            +SF +A WFWMT Q PKPSCH V   +W PSA +  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY+QRP+G
Sbjct:  231 VSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 7.885e-30
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SF++AIWFWMTAQ  KPSCH VII +W PS  +  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  157 ISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29
Identity = 56/94 (59.57%), Postives = 69/94 (73.40%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMT Q  KPSCH+VI   W PSA + +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PGDNLDCYNQR +
Sbjct:  158 VSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 129.028 bits (323), Expect = 1.030e-29
Identity = 54/94 (57.45%), Postives = 71/94 (75.53%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  224 VSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.294e-29
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+A+WFWMTAQ PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G+NLDCYNQRP+
Sbjct:  227 VSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.913e-29
Identity = 52/96 (54.17%), Postives = 74/96 (77.08%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 287
            ++F++AIWFWMTAQ PKPSCH+VI ++W PS  + ++GRLPGYG+ TNIINGG ECG+G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  159 VAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.942e-28
Identity = 53/94 (56.38%), Postives = 66/94 (70.21%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            +SFK+AIWFWMT Q  KPSCH VII +W PS  +  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  157 ISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.101e-26
Identity = 49/76 (64.47%), Postives = 62/76 (81.58%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCG 230
            +SFKSAIWFWMT Q PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  226 ISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
The following BLAST results are available for this feature:
BLAST of EG026473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHIB_VITVI2.710e-3054.37Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIX_PEA3.540e-3059.57Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI12_ORYSJ6.038e-3057.89Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI7.885e-3057.45Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_PETHY1.030e-2959.57Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI1_HORVU1.030e-2957.4526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIA_SECCE2.294e-2957.45Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI11_ORYSJ3.913e-2954.17Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLLC1.942e-2856.38Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI4_SOLTU3.101e-2664.47Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026473 ID=EG026473; Name=EG026473; organism=Citrus clementina; type=EST; length=476bp
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAT
TGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGCAAC
CGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGG
TGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGATGG
CACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTTAAT
AAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACAACT
AAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGACTGA
TCCAACATGGATCAATGAGTCTTCTC
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