EG026473

Overview
NameEG026473
Unique NameEG026473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:618..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.178e-25
Identity = 45/94 (47.87%), Postives = 68/94 (72.34%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            ++F++A+WFWMT +  KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.637e-25
Identity = 49/94 (52.13%), Postives = 65/94 (69.15%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            + FK+A+WFWMT Q PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++            DNLDCYNQ+P+
Sbjct:  117 VEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.052e-22
Identity = 45/103 (43.69%), Postives = 68/103 (66.02%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 308
            ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  237 VAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.904e-22
Identity = 45/103 (43.69%), Postives = 67/103 (65.05%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 308
            ++FK+A+W WMTA+ P +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  237 VAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.032e-21
Identity = 45/95 (47.37%), Postives = 59/95 (62.11%), Query Frame = 3
Query:    3 LSFKSAIWFWMTAQPP-KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 284
            LSF++A+WFWM       PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  210 LSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of EG026473 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.818e-11
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = 3
Query:   33 MTAQPPKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIEC 170
            MT Q  KPSCH+VI + W+P+A +  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of EG026473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI10_ORYSJ1.178e-2547.87Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA7.637e-2552.13Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ6.052e-2243.69Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.904e-2243.69Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR1.032e-2147.37Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI4_ARAHY2.818e-1160.87Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026473 ID=EG026473; Name=EG026473; organism=Citrus clementina; type=EST; length=476bp
TACTATCATTCAAGTCAGCAATCTGGTTCTGGATGACTGCACAGCCACCA
AAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGCAAT
TGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATATAA
TCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGCAAC
CGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGG
TGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGATGG
CACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTTAAT
AAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACAACT
AAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGACTGA
TCCAACATGGATCAATGAGTCTTCTC
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