EG026475

Overview
NameEG026475
Unique NameEG026475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:429..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.686e-44
Identity = 84/161 (52.17%), Postives = 105/161 (65.22%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  156 CFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFG 314          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.134e-43
Identity = 91/162 (56.17%), Postives = 105/162 (64.81%), Query Frame = 3
Query:    3 CFISEISPPSPYCN--LNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            C++ EI+   PYC+   NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+SFK+AIWFWM  Q PKPSCH VIT  W PSA D+ AGR+PGYG+ TNIINGGIECGQG  N A  +RIGF+  +C   G   G NLDCY Q+PFG
Sbjct:  172 CYLKEINC-QPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLCGDDLKLPLLQEPELVE--TDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFG 330          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 85/169 (50.30%), Postives = 108/169 (63.91%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 497
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  152 CFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGVDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 85/160 (53.12%), Postives = 103/160 (64.38%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E +PPS YC  +  +PC    KYYGRGPIQL++N+NY                    ATD  +SFK+A+WFWMT Q  KPS H+VIT  W PS  D  AGR PGYG+ TNI+NGG+ECG G +D V NRIGF+  +CG FGI  G NLDCY+Q+PF
Sbjct:  172 CFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY--GPAGRAIGVDLLSNPDLVATDATVSFKTALWFWMTPQGNKPSSHDVITGRWAPSPADAAAGRAPGYGVITNIVNGGLECGHGPDDRVANRIGFYQRYCGAFGIGTGGNLDCYNQRPF 329          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 7.353e-43
Identity = 84/169 (49.70%), Postives = 109/169 (64.50%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 497
            C++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  163 CWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSAGDRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43
Identity = 83/161 (51.55%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD V+SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  152 CFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSVISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 310          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.603e-43
Identity = 82/161 (50.93%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATD ++SFKSAIWFWMT Q PKPSCH+VIT  W+PS  D  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG NLDC +Q+ FG
Sbjct:  150 CFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDSIISFKSAIWFWMTPQSPKPSCHDVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFG 308          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.254e-42
Identity = 85/169 (50.30%), Postives = 108/169 (63.91%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 497
            C++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY  C                 AT+ V+SFKSAIWFWMTAQ PKPSCH+VIT  W PSA D  A RLPGYG+ TNIINGG+ECG G +  V++RIGF+  +C   G+ PG N+DC +Q+ F   L+  +M
Sbjct:  168 CYLREQGNPPSYCVQSSQWPCAPGQKYYGRGPIQISYNYNYGPCGRAIGQNLLNNPDLV--ATNAVVSFKSAIWFWMTAQSPKPSCHDVITGRWTPSAADRAANRLPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 82/169 (48.52%), Postives = 109/169 (64.50%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 497
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFK+A+WFWMT Q PKPSCH+VI   W PS+ D  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  ++
Sbjct:  162 CFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKTALWFWMTPQSPKPSCHDVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.794e-42
Identity = 83/169 (49.11%), Postives = 109/169 (64.50%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARSM 497
            C++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSA+WFWMT Q PKPSCH+VI   W+PS+ D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +C   G+ PG NLDC +Q+ FG  L+  +M
Sbjct:  158 CWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQPSSADRAANRLPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324          
The following BLAST results are available for this feature:
BLAST of EG026475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIC_SOLLC8.686e-4452.17Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI6_POPTR1.134e-4356.17Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI1_SOLTU5.630e-4350.30Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_ORYSJ7.353e-4353.13Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_TOBAC7.353e-4349.70Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI3_SOLTU9.603e-4351.55Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU9.603e-4350.93Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_TOBAC1.254e-4250.30Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHIT_SOLTU2.794e-4248.52Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_TOBAC2.794e-4249.11Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026475 ID=EG026475; Name=EG026475; organism=Citrus clementina; type=EST; length=653bp
ATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGT
TGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCA
CGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATT
GCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGA
TCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAAT
AAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTC
TTATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCT
TCT
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