EG026475

Overview
NameEG026475
Unique NameEG026475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:429..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.882e-41
Identity = 82/159 (51.57%), Postives = 104/159 (65.41%), Query Frame = 3
Query:    3 CFISEISPPSPYCN-LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF+SE +    YC+  ++PC    KYYGRGPIQLT NYNY                    +T+P +SFK+AIWFWMT Q  KPS H+VIT  W PSA D +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC +Q+ F
Sbjct:  163 CFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY--GLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.988e-41
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            C++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY +                  ATD V+SFK+A WFWMT Q PKPSCH VIT  W PS  D +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G NLDC +Q+PFG
Sbjct:  148 CYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQAGKAIGVDLVNNPDLV--ATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFG 306          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 1.174e-40
Identity = 82/161 (50.93%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    3 CFISEISPPSP-YCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E +  +P YC     +PC    KYYGRGPIQ+T+NYNY                    A+D  +SFK+A WFWMT Q PKPSCH VIT +W PSA+D  AGR+PGYG  TNIINGG+ECG G +D V +RIGF+  +C   G+  G NLDCY+Q+P+
Sbjct:  159 CFKEENNGNAPTYCEPKPEWPCAAGKKYYGRGPIQITYNYNY--GPAGQAIGSDLLNNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVITGQWTPSADDQAAGRVPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 164.466 bits (415), Expect = 4.461e-40
Identity = 83/160 (51.88%), Postives = 100/160 (62.50%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  160 CFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 9.938e-40
Identity = 76/151 (50.33%), Postives = 97/151 (64.24%), Query Frame = 3
Query:   30 SPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            S YC  +  +PC    KYYGRGPIQ+++NYNY                    A+D  +SFK+A WFWMT Q PKPSCH V+T +W P+ ND  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  173 SDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY--GPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMTPQSPKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 80/160 (50.00%), Postives = 99/160 (61.88%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E    + YC  +  +PC    +YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCY+Q+PF
Sbjct:  108 CFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMTAQAPKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 82/160 (51.25%), Postives = 100/160 (62.50%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E    S YC  +  +PC  GK YYGRGPIQL+ NYNY                    ATDP +SFK+A+WFWMTAQ PKPS H VIT +W PS  D  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G NLDCY+Q+PF
Sbjct:  163 CFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY--GPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMTAQAPKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.214e-39
Identity = 81/160 (50.62%), Postives = 97/160 (60.62%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            CF  E    S YC  +  +PC    +YYGRGPIQL+ NYNY                    ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  108 CFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNY--GPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.891e-39
Identity = 78/161 (48.45%), Postives = 99/161 (61.49%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            C+  E   P  YC  +  +PC    KY+GRGPIQ+++NYNY                    A D V+SFK+A+WFWMTAQ PKPS H+VIT  W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG NLDC +Q+PFG
Sbjct:   88 CYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLV--ANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.874e-38
Identity = 76/150 (50.67%), Postives = 95/150 (63.33%), Query Frame = 3
Query:   36 YC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            YC  +  +PC    KYYGRGPIQL++N+NY                    A+D  +SF +A WFWMT Q PKPSCH V T +W PSA+D  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY Q+PFG
Sbjct:  178 YCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
The following BLAST results are available for this feature:
BLAST of EG026475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIX_PEA6.882e-4151.57Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIB_VITVI8.988e-4149.69Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI3_ORYSJ1.174e-4050.93Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI1_HORVU4.461e-4051.8826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI1_ORYSJ9.938e-4050.33Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SECCE2.214e-3950.00Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIA_SECCE2.214e-3951.25Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI2_HORVU2.214e-3950.6326 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHID_SOLLC2.891e-3948.45Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI12_ORYSJ1.874e-3850.67Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026475 ID=EG026475; Name=EG026475; organism=Citrus clementina; type=EST; length=653bp
ATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGT
TGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCA
CGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATT
GCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGA
TCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAAT
AAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTC
TTATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCT
TCT
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