EG026475

Overview
NameEG026475
Unique NameEG026475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:429..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.072e-37
Identity = 73/158 (46.20%), Postives = 102/158 (64.56%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWN-DAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            C ++EI+P  P           YYGRGPIQLT  YNY                    ++DPV++F++AIWFWMTAQ PKPSCH+VIT++W PS +D ++GRLPGYG+ TNIINGG ECG+G++ D  ++R+G++  +C  F +  G N+ C  Q+P+G
Sbjct:  109 CRVNEITPSDP----------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLV--SSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.535e-37
Identity = 71/135 (52.59%), Postives = 86/135 (63.70%), Query Frame = 3
Query:   66 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +YYGRGPIQLT   NY R                  ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.535e-37
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN--YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCG 416
            CF+ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  162 CFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLV--ATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.874e-37
Identity = 74/136 (54.41%), Postives = 88/136 (64.71%), Query Frame = 3
Query:   66 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 473
            +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D  A R+PGYG+ TNIINGGIECG G NDAV +RIG++  +CG   + PG NLDCY+Q+ FG
Sbjct:  118 RYYGRGPIQLTNRNNYEKAGTAIGQELVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGRWTPSAADQAANRVPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.874e-37
Identity = 77/173 (44.51%), Postives = 100/173 (57.80%), Query Frame = 3
Query:    3 CFISEISPPSPYCN----LNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF---GLILMARSM 497
            C ++E++P S YC+     +YPC   YYGRGP+QL WNYNY  C                 ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC +      +NRI ++  +C    + PG NL C +Q+ F   GL+ M  +M
Sbjct:  146 CLVNELNPNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKV--ATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGLLKMVGTM 316          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 70/135 (51.85%), Postives = 83/135 (61.48%), Query Frame = 3
Query:   66 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +YYGRGPIQLT   NY R                  ATDP++SFK+AIWFWMT Q  KPSCH VI  +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  116 RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 77/148 (52.03%), Postives = 90/148 (60.81%), Query Frame = 3
Query:   36 YC---NLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            YC    +N      YYGRGPIQLT   NY                    +TD V+SFK+AIWFWMTAQ  KPSCH+VI   W PSA D  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCY+Q+ F
Sbjct:  114 YCFKEEINKATSPPYYGRGPIQLTGQSNYQAAGNALGLDLVGNPDLV--STDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.666e-36
Identity = 73/134 (54.48%), Postives = 86/134 (64.18%), Query Frame = 3
Query:   69 YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +YGRGPIQLT   NY                    ATD  +SFK+AIWFWMTAQ  KPSCH+VIT +W PSA D +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PG NLDCY Q+ F
Sbjct:  113 FYGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.137e-35
Identity = 67/104 (64.42%), Postives = 79/104 (75.96%), Query Frame = 3
Query:  177 TDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGW-NDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILM 485
            TDP ++FK+A+WFWMT Q PKPSCH VIT+ W PSA D  AGR+PGYG+ TNIINGGIECGQG  N+A  NRIGF+ T+C   G   G NLDCY Q+PFG  L+
Sbjct:  194 TDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDCYQQRPFGYGLL 297          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.533e-35
Identity = 71/161 (44.10%), Postives = 98/161 (60.87%), Query Frame = 3
Query:    3 CFISEISPPSPYCNLN---YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            C+  EI+P S YC+     +PC  GK Y+GRGPIQ++WN+NY                     +D  ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC +  +  V NRIGF+  +C   G+  G NLDC HQQPF
Sbjct:  132 CYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNYGPAGQALGFDGLRNPEIVANCSD--IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
The following BLAST results are available for this feature:
BLAST of EG026475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI11_ORYSJ2.072e-3746.20Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI3.535e-3752.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI4_SOLTU3.535e-3752.82Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIQ_TOBAC7.874e-3754.41Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR7.874e-3744.51Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIA_SOLLC2.992e-3651.85Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_ORYSJ5.104e-3652.03Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_SOLLC6.666e-3654.48Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIB_POPTR1.137e-3564.42Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHI10_ORYSJ2.533e-3544.10Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026475 ID=EG026475; Name=EG026475; organism=Citrus clementina; type=EST; length=653bp
ATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGT
TGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCA
CGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATT
GCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGA
TCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAAT
AAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTC
TTATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCT
TCT
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