EG026475

Overview
NameEG026475
Unique NameEG026475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:429..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 79/158 (50.00%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   18 ISPPSPY----CNL---NYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +SP  PY    C L   N    G YYGRGPIQLT   NY                    ATD  +SFK+AIWFWMT Q  KPSCH+VIT  W PSA D +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PG NLDCY+Q+ F
Sbjct:   97 LSPDGPYAGGYCFLREGNQMGNG-YYGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 71/135 (52.59%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   66 KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +YYGRGPIQLT   NY +                  ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PG NLDCY+Q+ F
Sbjct:  118 RYYGRGPIQLTNQNNYEKAGNAIRQDLVNNPDLV--ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-30
Identity = 65/150 (43.33%), Postives = 86/150 (57.33%), Query Frame = 3
Query:   21 SPPSPYCNLNYPCRGKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 470
            +P  PY          Y+GRGPIQ+++NYNY                     +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++             NLDCY+Q+PF
Sbjct:   66 APDGPY---ELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLV--TSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPF 199          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.713e-29
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 494
            C+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  173 CYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 69/169 (40.83%), Postives = 96/169 (56.80%), Query Frame = 3
Query:    3 CFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 494
            C+       S +C  N  +PC  GK Y+ RGP+Q+ +NYNY                    ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  173 CYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELV--ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 56/156 (35.90%), Postives = 78/156 (50.00%), Query Frame = 3
Query:    3 CFISEISPPS-PYCNLN---YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I+EI+  S  YC+ N   +PC+   KYYGRGP+Q++WNYNY                    A DP +SFK+A+WFWM                     N+V+   L G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  156 CYINEINGASMDYCDKNNKQWPCQPGKKYYGRGPLQISWNYNY--GPAGQNIGFDGLRDPDRVAQDPTISFKTALWFWM---------------------NNVHQVMLQGFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVDPGGNLYC 288          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.670e-19
Identity = 54/145 (37.24%), Postives = 68/145 (46.90%), Query Frame = 3
Query:   36 YCNLN----YPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            YC+ +    YPC    KYYGRGP+QL+WNYNY                    ATD   SFK+A+WFWMT      + H V+                 G+G TT  ING +EC     D   +RI F+  +C  FG+ PG NL C
Sbjct:  167 YCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT------NVHSVMNQ---------------GFGATTKAINGALECNGQNQDQANDRIQFYKKYCADFGVAPGDNLTC 288          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.263e-18
Identity = 53/156 (33.97%), Postives = 78/156 (50.00%), Query Frame = 3
Query:    3 CFISEISPPS-PYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I+EI+  +  YC   N  +PC+   KYYGRGP+Q++WN+NY                    A DP +SFK+A+WFWM       + H+V++                G+G T   ING +EC      AV  R+ ++  +C +FG+ PG NL C
Sbjct:  153 CYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWMN------NVHQVMSQ---------------GFGATIRAINGALECNGKNPGAVNARVNYYKDYCRQFGVSPGGNLYC 285          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.650e-18
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 3
Query:    3 CFISEISPPSPYC---NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 452
            C+ISEI+  + YC   N  +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC  G N A  N R+G++  +C +  + PG NL C
Sbjct:  149 CYISEINKSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALEC-NGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.814e-18
Identity = 55/156 (35.26%), Postives = 77/156 (49.36%), Query Frame = 3
Query:    3 CFISEISPPSPYCN---LNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRN-RIGFFSTFCGKFGIQPGYNLDC 452
            C+ISEI+  + YC+     +PC    KYYGRGP+Q++WNYNY                    A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG G N A  N R+G++  +C + G+ PG NL C
Sbjct:  138 CYISEINKSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECG-GNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
The following BLAST results are available for this feature:
BLAST of EG026475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_PETHY3.658e-3450.00Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIP_TOBAC3.658e-3452.59Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIT_AVESA3.204e-3043.33Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ2.713e-2940.83Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI3.543e-2940.83Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI5_ORYSJ3.926e-2035.90Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU9.670e-1937.24Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ1.263e-1833.97Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_MAIZE1.650e-1835.26Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHIB_MAIZE2.814e-1835.26Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026475 ID=EG026475; Name=EG026475; organism=Citrus clementina; type=EST; length=653bp
ATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGT
TGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCA
CGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATT
GCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGA
TCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAAT
AAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTC
TTATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCT
TCT
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