EG026475

Overview
NameEG026475
Unique NameEG026475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:429..1081. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.268e-18
Identity = 56/156 (35.90%), Postives = 79/156 (50.64%), Query Frame = 3
Query:    3 CFISEISPPS-PYCNLN---YPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I EI+  S  YC+ N   YPC  GK Y+GRGPIQL+WNYNY  C                 +++P ++F++ +WFWM +               +P  N        G+G T   ING +EC  G + AV  RI ++  +CG+ G+ PG NL C
Sbjct:  137 CYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGACGQSLNLNLLGQPELV--SSNPTVAFRTGLWFWMNSV--------------RPVLNQ-------GFGATIRAING-MECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC 268          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.382e-17
Identity = 53/156 (33.97%), Postives = 74/156 (47.44%), Query Frame = 3
Query:    3 CFISEISPPSP-YCN---LNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I EI  PS  YC+     +PC  GK YYGRGP+Q++WN+NY                    A  PVL+F++A+W+W        + H+                   G+G T   ING +EC      AV NR+ ++  FC +FG+ PG NL C
Sbjct:  137 CYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.544e-16
Identity = 53/156 (33.97%), Postives = 77/156 (49.36%), Query Frame = 3
Query:    3 CFISEISP-PSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDA-VRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I E     + YC  +  YPC    +Y+GRGP+QL+WNYNY+                     DP++SFK+++WFW+     +     VI D  +            G+G T  IINGG EC  G N A +  R+G++  +C + G+ PG NL C
Sbjct:  115 CYIEERDGHANNYCQESQQYPCNPNKEYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIV--GRDPIISFKTSLWFWI-----RKGVQYVILDPNQ------------GFGATIRIINGGQEC-DGHNTAQMMARVGYYQEYCAQLGVSPGNNLPC 250          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.887e-14
Identity = 49/157 (31.21%), Postives = 72/157 (45.86%), Query Frame = 3
Query:    3 CFISEISPPSP-YCN----LNYPCRGK--YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDC 452
            C+I EI   S  YC+      YPC     Y+GRGPIQL+WN+NY                    + D V+SFK+A+W+WM  Q  +P  ++                   G+G T   ING +EC       V+ R+ +++ +C + G+  G NL C
Sbjct:  137 CYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM--QHVRPVINQ-------------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.219e-14
Identity = 50/137 (36.50%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   48 NYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWND-AVR-NRIGFFSTFCGKFGIQPGYNL 446
            ++PC    KY  RGPIQLT N+NY                      DP++SFK+A+WFWM+    KPSCH+++      +AN   A R+P  G+  NII+       G +D AVR + IGF+  +C   G+  G++L
Sbjct:  227 DWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF----GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of EG026475 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 3
Query:  219 MTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 356
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of EG026475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI4_BRANA6.268e-1835.90Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHI6_ORYSJ2.382e-1733.97Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_DIOJA1.544e-1633.97Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI4_PHAVU1.887e-1431.21Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
AGI_URTDI3.219e-1436.50Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHI4_ARAHY3.013e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AF12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026475 ID=EG026475; Name=EG026475; organism=Citrus clementina; type=EST; length=653bp
ATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCCTACTGTAATCTTAAC
TATCCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCACTTG
GAATTACAATTACTTACGGTGCGGAGAAGACCTAGGGCTAGGAGAGGAGT
TGTTGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAG
TCAGCAATCTGGTTCTGGATGACCGCACAGCCACCAAAGCCATCATGCCA
CGAAGTCATTACCGACGAATGGAAACCATCAGCAAATGACGTAAACGCCG
GCCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATT
GAATGTGGCCAAGGTTGGAATGACGCTGTACGTAACCGTATTGGGTTCTT
TAGCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTTACAATCTTGATT
GCTACCACCAACAGCCTTTTGGCCTTATTCTGATGGCACGATCTATGTGA
TCATCATGATCAACGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAAT
AAAAACTTTAGATGTCACACTTGTAGGTGGACAACTAAGTTGTTACGCTC
TTATTGTAAATAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCT
TCT
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