EG026488

Overview
NameEG026488
Unique NameEG026488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length785
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9303 contig Ccv1_Contig9303:1..785. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG026488 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.974e-11
Identity = 30/95 (31.58%), Postives = 58/95 (61.05%), Query Frame = 3 
Query:  303 ILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGA 587
            ++   + E++N+ L   K+ +   +  FTA WC PC+FI  +  EL+ +H  V  +K+D+D+  L +   + ++ A+PTF++ +  EK+ ++VGA
Sbjct:   13 VIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDE--LATVAQEFDVQAMPTFVYMKGEEKLDKVVGA 105
[Close]
BLAST of EG026488 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.803e-11
Identity = 36/108 (33.33%), Postives = 56/108 (51.85%), Query Frame = 3 
Query:  300 NILVIESGEEFNSSLGKVKDDSLPAIFYFTAAWCGPCKFIWLVIGELSAEHPHVTTYKIDIDQKGLESTLSKLNISAVPTFLFFQHGEKVAEIVGADVSRLKTTMEQL 623
            N+    S E + S L +  D        FTA WCGPC+ I  V  ELS + P +   K+D+D+  L     + ++ A+PTF+F + G+ V ++VGA    L+  +  L
Sbjct:    5 NVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDE--LRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAAL 110
The following BLAST results are available for this feature:
BLAST of EG026488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
TRXH1_BRANA5.974e-1131.58Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_PICMA7.803e-1133.33Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1BF02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026488 ID=EG026488; Name=EG026488; organism=Citrus clementina; type=EST; length=785bp
GGCCCGCAGCGGCACCGCTCCCAAAAACCCTAACGAAGAAGAGAGGTGAA
TTTGCAGAGAAAATGAGAGGAAGTTCTTCAGTTATTTTGCGTCGATTACT
TGTTCGACGCCAAGTCTTAAATCCCAATTCTACTAATATTGCAAAATCAC
TAATTTCGCATTCTACAAACAACACTACTGTTCCCAAGATACCCTCGTTC
CGTAATTATATTCCTGCTAGCTCCTCGCAATCACAGTCACAGATGCTTCC
TTCTCTTCAATTCCACAGAACTCTGTTCTCATCCCCAGATGGTCCATCAA
ATATTCTAGTCATCGAGTCAGGGGAAGAGTTCAATAGCTCACTTGGCAAA
GTTAAAGATGATTCTCTGCCAGCGATATTTTATTTCACTGCTGCTTGGTG
TGGCCCCTGCAAGTTTATATGGCTTGTCATAGGGGAGTTGAGTGCAGAAC
ACCCTCATGTAACAACATATAAGATTGACATTGACCAGAAAGGACTTGAA
AGCACATTAAGCAAGTTAAACATCAGTGCTGTGCCAACATTCTTGTTCTT
TCAACATGGAGAAAAGGTGGCTGAAATAGTTGGTGCTGATGTCTCACGGT
TGAAGACAACTATGGAACAACTTTACAAGAAGGATTGAATGAAGTAAGGA
TACCTGATCAGATGAGCTTGTAAGATTTTCATGAGAGATTTTGGGAATGA
TGATGATATTTGTTTTCTGTGTCAGGTTAAAGAAAATCTTTGTATACAGT
GTTATTGTGATTTATCCATAAATGATTTGTTTAAG
back to top