EG026490

Overview
NameEG026490
Unique NameEG026490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG026490_ssr528 microsatellite EG026490_ssr528:528..539. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:5..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026490 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.535e-37
Identity = 68/107 (63.55%), Postives = 82/107 (76.64%), Query Frame = 3
Query:  147 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVNSND 467
            + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  VRIVDQC+NGGL+LD  V+ ++DTNG G  QG L V Y+FV+  D
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTVRIVDQCSNGGLDLDVNVFNQIDTNGQGNAQGHLIVNYDFVDCGD 107          
BLAST of EG026490 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 56/84 (66.67%), Postives = 69/84 (82.14%), Query Frame = 3
Query:  207 KPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIVRIVDQCANGGLNLDEGVYKKLDTNGIGYQQGFLTVTYEFVN 458
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IVRIVDQC+NGGL+LD GV+ ++DT+G GYQQG L V Y+FV+
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIVRIVDQCSNGGLDLDVGVFNRIDTDGRGYQQGHLIVNYQFVD 84          
BLAST of EG026490 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.598e-13
Identity = 35/64 (54.69%), Postives = 41/64 (64.06%), Query Frame = 3
Query:  126 TYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGT 317
            TYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWTAFC   GP       RCLR   + T
Sbjct:   35 TYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP-------RCLRTNAAVT 89          
The following BLAST results are available for this feature:
BLAST of EG026490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4_PRUPE3.535e-3763.55Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
WIN_SOYBN2.077e-2966.67Wound-induced protein (Fragment) OS=Glycine max GN... [more]
CHAL_BRARA1.598e-1354.69Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BG03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026490 ID=EG026490; Name=EG026490; organism=Citrus clementina; type=EST; length=653bp
GAGCGGATAAGTTAAGCTTAGAACATTAAAAGAAAAATATGGGGAGGTTC
GGTCTCTGTGTGATTCTGTCAGTTTGTCTACTGGTGGCAGCTGCTTCTGC
CCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACCACCCTGAGC
AAATTGGATGGGACTTGACGGCAGCAAGCGCTTTCTGCGCAACATGGGAT
GCCAACAAGCCCTTGGCCTGGCGCCAAAAATATGGCTGGACTGCTTTCTG
TCATTCGGGCGGACCCATTGGACAAACTGCTTGTGGCAGGTGCTTAAGGG
TCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAG
TGTGCCAATGGAGGCTTAAATTTGGACGAAGGAGTGTACAAGAAATTGGA
CACGAATGGAATAGGCTATCAACAAGGCTTCCTTACTGTCACCTACGAGT
TTGTGAACAGCAATGATTAAAGCACCATCTATAATTCCATGATCAATCGA
ACCTTAATGCTGAAATAGGGTTAATTTATTAATTAATTATCCCTCTATAT
ACTTAATTCATAAATAAAATAAAACTTCTGATGAAGTATCAACAACTGCT
CATGGGCACTACAGTTATGTAATAAAAGTTTCCTTTTTTTAAGACGAAAC
AAA
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