EG026500

Overview
NameEG026500
Unique NameEG026500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.588e-21
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMA 237
            +VI  +W PS+ ++ AGR+PGYG+ TNIINGG+ECG G +D V NRIGF+  +C   GI  G NLDCY+QRP+   L A
Sbjct:  254 DVITGQWTPSSGDIAAGRVPGYGVITNIINGGLECGFGPDDRVANRIGFYQRYCDVLGIGYGSNLDCYDQRPFNSGLTA 332          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.588e-21
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGG-NDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNL 231
            VI   W PSA ++ AGR+PGYG+ TNIINGGIECGQGG N A  +RIGF+  +C   G   G NLDCY QRP+G  L
Sbjct:  257 VITGNWTPSAADLEAGRVPGYGVITNIINGGIECGQGGPNAANEDRIGFYKKYCDSLGTTYGSNLDCYQQRPFGYGL 333          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  237 DVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.685e-21
Identity = 41/82 (50.00%), Postives = 58/82 (70.73%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  235 DVITGRWQPSGTDQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.119e-21
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VII  W PS  +  AGR+PG+GL TNIINGG+ECGQG N  V +RIGF+  +C   G+  G+NLDCYNQR Y       SM
Sbjct:  240 DVIIGAWSPSGSDQAAGRVPGFGLITNIINGGLECGQGWNAKVEDRIGFYKRYCDTLGVGYGNNLDCYNQRSYNNGPSVDSM 321          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VII  W PS+ +  A RLPG+G+ TNIINGG+ECG+G ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  247 DVIIGRWNPSSADRAANRLPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            +VII  W PSA + +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDCYNQR +
Sbjct:  178 DVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 7.992e-21
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VI  +W+PS  +  AGRLPGYG+ TNIINGG+ECG+G +  V +RIGF+  +C  FG+ PG NLDCYNQR +
Sbjct:  255 VIAGQWQPSDADRAAGRLPGYGVITNIINGGLECGRGQDGRVADRIGFYQRYCNIFGVNPGGNLDCYNQRSF 326          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.044e-20
Identity = 43/85 (50.59%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 255
            +VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  243 DVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.044e-20
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            +VI   W+PS  +  A R+PG+G+ TNIINGG+ECG G +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  241 DVITGRWQPSGADQAANRVPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322          
The following BLAST results are available for this feature:
BLAST of EG026500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI9_ORYSJ3.588e-2155.70Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI6_POPTR3.588e-2159.74Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI3_SOLTU4.685e-2150.00Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_SOLTU4.685e-2150.00Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_THECC6.119e-2154.88Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHIT_SOLTU7.992e-2151.22Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHIP_TOBAC7.992e-2158.90Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHIB_ARATH7.992e-2158.33Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU1.044e-2050.59Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIC_SOLLC1.044e-2050.00Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CC08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026500 ID=EG026500; Name=EG026500; organism=Citrus clementina; type=EST; length=411bp
GAAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGG
CCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTG
AATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTT
ACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTG
CTACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGAT
CATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATA
AAAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGT
TACGCTCTTATTGCAAGTAAATTAAATAAGACTGATCCAACATGGATCAA
TGAGTCTTCTC
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