EG026500

Overview
NameEG026500
Unique NameEG026500
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.385e-19
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 222
            V   +W PSA +  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY+QRP+G
Sbjct:  253 VATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            +VI   W PSA + +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PGDNLDCYNQR +
Sbjct:  179 DVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19
Identity = 39/72 (54.17%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VI  +W PS  +  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  194 VIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 91.6633 bits (226), Expect = 1.276e-18
Identity = 38/72 (52.78%), Postives = 52/72 (72.22%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  246 VITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.666e-18
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 246
            VI   W PS  + +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G+NLDC NQRP+G  L+  ++
Sbjct:  234 VITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.176e-18
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VII +W PS  +  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  179 VIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.843e-18
Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G+NLDCYNQRP+
Sbjct:  249 VITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.143e-17
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    4 VIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            VII +W PS  +  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  179 VIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.105e-17
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 222
            +VI ++W PS  + ++GRLPGYG+ TNIINGG ECG+G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  180 DVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of EG026500 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.741e-16
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 EVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 219
            +V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  218 QVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
The following BLAST results are available for this feature:
BLAST of EG026500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI12_ORYSJ4.385e-1954.79Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY9.770e-1954.79Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI2_HORVU9.770e-1954.1726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU1.276e-1852.7826 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHIB_VITVI1.666e-1849.38Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHIA_SOLCI2.176e-1852.78Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SECCE2.843e-1852.78Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIA_SOLLC3.143e-1751.39Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI11_ORYSJ4.105e-1748.00Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI10_ORYSJ7.741e-1645.21Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1CC08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026500 ID=EG026500; Name=EG026500; organism=Citrus clementina; type=EST; length=411bp
GAAGTCATTATCGACGAATGGAAACCATCAGCAATTGAAGTAAACGCCGG
CCGGCTTCCGGGATACGGTCTAACCACAAATATAATCAACGGTGGAATTG
AATGTGGCCAAGGTGGGAATGACGCTGTACGCAACCGTATTGGGTTCTTT
ACCACTTTCTGTGGCAAGTTTGGGATTCAGCCTGGTGACAATCTTGATTG
CTACAACCAACGGCCTTATGGCCTTAATCTGATGGCACAATCTATGTGAT
CATCATGATCAAGGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATA
AAAACTTTAGATGTCACAGTTGTAGGTGGACAACTAAATTATTCGTTTGT
TACGCTCTTATTGCAAGTAAATTAAATAAGACTGATCCAACATGGATCAA
TGAGTCTTCTC
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