EG026517

Overview
NameEG026517
Unique NameEG026517
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length600
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 43/128 (33.59%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    6 YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 389
            YYGRGP+Q+SWN+NY               +PD +A  PVL+F++A+W+W        + H+  +                G+G T   ING +EC      AV NR+ ++  FC +FG+ PG +L C
Sbjct:  165 YYGRGPLQISWNFNY--GPAGQSIGFDGLGDPDAVARSPVLAFQTALWYWTN------NVHDAFVSG-------------QGFGATIRAINGALECDGKNPTAVSNRVAYYQQFCQQFGVDPGSNLTC 271          
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 7.617e-17
Identity = 48/127 (37.80%), Postives = 68/127 (53.54%), Query Frame = 3
Query:    3 KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSL 383
            KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH++++     +AN   A R+P  G+  NII+     G    A   + IGF+  +C   G+  G  L
Sbjct:  235 KYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVL-----NANSA-ANRIPNKGVIGNIISRAF--GHDDFAVRSSSIGFYKRYCDMLGVSYGHDL 351          
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.299e-16
Identity = 44/129 (34.11%), Postives = 64/129 (49.61%), Query Frame = 3
Query:    3 KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 389
            KYYGRGP+Q+SWNYNY               +P  +A D V++FK+A+WFWM       S H V+                 G+G TT  +   +ECG    A +  R+G++  +C + G+ PG +L C
Sbjct:  164 KYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMN------SVHGVVPQ---------------GFGATTRAMQRALECGGNNPAQMNARVGYYRQYCRQLGVDPGPNLTC 269          
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.216e-16
Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = 3
Query:    3 KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 389
            KYYGRGP+Q+SWNYNY               +P+ +A D V++FK+A+WFWM                     N+V+     G+G T   ING +EC     A +  R+G++  +C +  + PG +L C
Sbjct:  175 KYYGRGPLQISWNYNYGPAGRDIGFNGLA--DPNRVAQDAVIAFKTALWFWM---------------------NNVHGVMPQGFGATIRAINGALECNGNNPAQMNARVGYYKQYCQQLRVDPGPNLIC 280          
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 3
Query:    6 YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGGNAAVRNRIGFFTTFCGKFGIQPGDSLDC 389
            Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM    P       +I++              G+G T   ING +EC       V+ R+ ++T +C + G+  GD+L C
Sbjct:  166 YHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWMQHVRP-------VINQ--------------GFGATIRAINGALECDGANPTTVQARVNYYTEYCRQLGVATGDNLTC 270          
BLAST of EG026517 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.258e-11
Identity = 29/46 (63.04%), Postives = 36/46 (78.26%), Query Frame = 3
Query:  156 MTAQPPKPSCHEVIIDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 293
            MT Q  KPSCH+VI + W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of EG026517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI6_ORYSJ2.005e-1733.59Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
AGI_URTDI7.617e-1737.80Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_MAIZE1.299e-1634.11Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIA_MAIZE2.216e-1633.33Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU3.200e-1532.81Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHI4_ARAHY1.258e-1163.04Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB1DF06ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026517 ID=EG026517; Name=EG026517; organism=Citrus clementina; type=EST; length=600bp
GGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATTAC
TTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAATCC
AGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGT
TCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTATC
GACGAATGGAAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGG
ATACGGTCTAACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAG
GTGGGAATGCCGCTGTACGTAACCGTATTGGGTTCTTTACCACTTTCTGT
GGCAAGTTTGGGATTCAGCCTGGTGACAGTCTTGATTGCTACAACCAACG
ACCTTATGGCCTTAATCTGATGGCACAATCTATGTGATCATCATGATCAA
CGTTTTAGTAAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGAT
GTCACACTTGTAGGTGGACAACTAAATTGTTAGTTTGTTACGCTCTTATT
GTAAGTAAATTAAATAAGACTGATCCAACATGGATCAATGAGTCTTCACC
back to top