EG026519

Overview
NameEG026519
Unique NameEG026519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length435
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG026519_ssr320 microsatellite EG026519_ssr320:320..331. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9835 contig Ccv1_Contig9835:213..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG026519 vs. ExPASy Swiss-Prot
Match: WIN1_SOLTU (Wound-induced protein WIN1 OS=Solanum tuberosum GN=WIN1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.769e-29
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 2 
Query:    2 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 259
            PL+WR+KYGWTAFC   GP G+ +CG+CLRVTN+ TGAQ  VRIVDQC+NGGLDLD  VF+++DT+G G  QG L V+Y+FV+C D
Sbjct:  114 PLSWRKKYGWTAFCGPVGPRGRDSCGKCLRVTNTRTGAQTTVRIVDQCSNGGLDLDVNVFRQIDTDGNGNHQGHLIVNYQFVDCGD 199
[Close]
BLAST of EG026519 vs. ExPASy Swiss-Prot
Match: HEVL_ARATH (Hevein-like protein OS=Arabidopsis thaliana GN=HEL PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.940e-29
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 2 
Query:    2 PLAWRQKYGWTAFCHSGGPIGQAACGRCLRVTNSGTGAQQIVRIVDQCANGGLDLDEGVFKKLDTNGIGYQQGFLTVSYEFVNCND 259
            P AWR KYGWTAFC   GP GQA+CG+CLRV N+ T A   VRIVDQC+NGGLDLD  +F ++DT+G GYQQG L V Y+FV+C +
Sbjct:  108 PYAWRSKYGWTAFCGPAGPRGQASCGKCLRVKNTRTNAAVTVRIVDQCSNGGLDLDVAMFNQIDTDGFGYQQGHLIVDYQFVDCGN 193
The following BLAST results are available for this feature:
BLAST of EG026519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WIN1_SOLTU1.769e-2965.12Wound-induced protein WIN1 OS=Solanum tuberosum GN... [more]
HEVL_ARATH3.940e-2963.95Hevein-like protein OS=Arabidopsis thaliana GN=HEL... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DF09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026519 ID=EG026519; Name=EG026519; organism=Citrus clementina; type=EST; length=435bp
GCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTGCTTTCTGTCATTCGG
GCGGACCCATTGGACAAGCTGCTTGTGGCAGGTGCTTAAGGGTCACAAAC
AGTGGTACAGGAGCCCAACAAATTGTGAGAATTGTTGATCAGTGTGCCAA
TGGAGGCTTAGATTTGGACGAAGGAGTGTTCAAGAAATTGGACACCAATG
GAATAGGCTATCAACAAGGCTTCCTTACTGTCAGCTACGAGTTTGTGAAC
TGCAATGATTAAAGCACCATCTATAATTCCATGATCGATCGAAGCTTAAT
GCTGTAATAGGGTTAATTTATTAATTAATTATCCCTCTATATACTTAGTT
CATAAATAAAAATAAAACTTCTGATGAAGTATCAAGAAGTGCTCATGGGC
ACTACAGTTATGTAATAAAAGTTTCCTTTTTTTAC
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