EG026522

Overview
NameEG026522
Unique NameEG026522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2304..2893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.169e-30
Identity = 72/154 (46.75%), Postives = 89/154 (57.79%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGK---EIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            + S  HAA+NFGQY  GGY PNRP   R  +   +    ++  FL  P    LN  P  ++ATK MA++D LSTHSPDEEYLG+   E    W  D    AA   F   +   E  I+ RNAD   +NR GAG++PYELL P S PGVT +GVP
Sbjct:  760 LASAQHAALNFGQYPLGGYVPNRPPLIRRLLPDLERDAAEYAAFLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSSPPGVTCRGVP 913          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOXA_SOLLC (Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.867e-28
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            + S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++   + P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAFE+F  KL ++E  I  RN +  L NR G    PY LL P SE G+TGKG+P
Sbjct:  707 IASALHAAVNFGQYPYAGYLPNRPTVSRKFMP--EPGTPEYEELKKNPDKAFLKTITAQLQTLLGVSLIEILSRHTTDEIYLGQRESPEWTKDKEPLAAFERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEGGLTGKGIP 855          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX1_HORVU (Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.867e-28
Identity = 66/157 (42.04%), Postives = 91/157 (57.96%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 454
            + S  HAAVNFGQY Y G+ PNRPT +R  +   +P  E++      PE A ++T  SQIQ    +++L+VLS HS DE YLG+   P W  DP     F++F  +L+E+E  +   N DP+L+NRNG    PY LL P +        G+T KG+P
Sbjct:  703 IGSALHAAVNFGQYPYAGFLPNRPTVSRRRMP--EPGTEEYAELERDPERAFIHTITSQIQTIIGVSLLEVLSKHSSDELYLGQRDTPEWTSDPKALEVFKRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIP 857          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            + S  HAAVNFGQY Y GY PNRPT +R  +   +P   +++     P+ A L T  +Q+Q    ++++++LS H+ DE YLG+   P W +D    AAF++F  KL ++E  I  RN D  L NR+G    PY LL P SE G+TGKG+P
Sbjct:  708 IASALHAAVNFGQYPYAGYLPNRPTVSRRFMP--EPGTPEYEELKRNPDKAFLKTITAQLQTLLGVSLVEILSRHTTDEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIP 856          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX1_ARATH (Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.438e-28
Identity = 71/153 (46.41%), Postives = 92/153 (60.13%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATED-PSDEQWKFFLEK-PENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            V S  HAAVNFGQY   GY PNRPT +R  +  E+ P  E+    LEK P+   L T  +Q+Q    ++++++LSTHS DE YLG+     W  +     AFEKF  K+ E+E  ID RN D  L+NR G   +PY LL P SE GVTG+G+P
Sbjct:  706 VASALHAAVNFGQYPVAGYLPNRPTISRQYMPKENTPEFEE----LEKNPDKVFLKTITAQLQTLLGISLIEILSTHSSDEVYLGQRDSKEWAAEKEALEAFEKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEGGVTGRGIP 854          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.264e-28
Identity = 66/157 (42.04%), Postives = 88/157 (56.05%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 454
            + S  HAAVNFGQY Y GY PNRPT +R  +   +P  E +      PE A + T  SQ+Q    +++++VLS HS DE YLG+   PAW  D     AF +F  +L+E+EG +   N D  L+NRNG    PY LL P +        G+T KG+P
Sbjct:  707 IASALHAAVNFGQYPYAGYLPNRPTVSRRRMP--EPGTEAYGELGRDPERAFIRTITSQLQTIIGISLIEVLSKHSSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIP 861          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOXX_SOYBN (Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.696e-27
Identity = 65/149 (43.62%), Postives = 88/149 (59.06%), Query Frame = 2
Query:    8 SGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            S  HAAVNFGQY YGG   NRPT AR  I  E     ++   ++ P+ A L T   + +    ++++++LS H+ DE YLG+   P W  D     AF++F  KL  +EG I+ARN+DP LRNR G   +PY LL   SE G+T KG+P
Sbjct:  713 SALHAAVNFGQYPYGGLILNRPTLARRFIPAE--GTPEYDEMVKNPQKAYLRTITPKFETLIDLSVIEILSRHASDEIYLGERETPNWTTDKKALEAFKRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLLHRSSEEGLTFKGIP 859          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX1_ORYSJ (Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=Os03g0699700 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.133e-25
Identity = 61/157 (38.85%), Postives = 88/157 (56.05%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSE------PGVTGKGVP 454
            + S  HAAVNFGQY Y GY PNRPT +R  +   +P  +++    E PE   + T  SQ Q    ++++++LS HS DE YLG+   P W  DP    AF++F  +L+E+E  +   N DP L+NR G    PY L+ P +        G+T +G+P
Sbjct:  704 IASALHAAVNFGQYPYAGYLPNRPTISRRPMP--EPGSKEYTELDENPEKFFIRTITSQFQTILGVSLIEILSKHSADEIYLGQRDTPEWTSDPKALEAFKRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIP 858          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX3_PEA (Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.932e-25
Identity = 61/149 (40.94%), Postives = 88/149 (59.06%), Query Frame = 2
Query:    8 SGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGVP 454
            S  HAAVNFGQY YGG   NRPT +R  +   +    +++  ++ P+ A L T   + Q    ++++++LS H+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN D KLRNR+G   +PY LL P S+ G+T +G+P
Sbjct:  710 SALHAAVNFGQYSYGGLILNRPTLSRRFMP--EKGSAEFEELVKSPQKAYLKTITPKFQTLIDLSVIEILSRHASDELYLGERDNPNWTSDKRALEAFKKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSKEGLTFRGIP 856          
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOX1_SOYBN (Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.303e-25
Identity = 62/152 (40.79%), Postives = 88/152 (57.89%), Query Frame = 2
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLGKEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLR-NRNGAGMVPYELLKPFSEPGVTGKGVP 454
            + S  HAAVNFGQY YGG   NRPT +R  +   +    +++  +   E A L T  S++     ++++++LSTH+ DE YLG+   P W  D     AF+KF  KL E+E  +  RN DP L+ NR G   +PY LL P SE G+T +G+P
Sbjct:  685 IASALHAAVNFGQYPYGGLIMNRPTASRRLLP--EKGTPEYEEMINNHEKAYLRTITSKLPTLISLSVIEILSTHASDEVYLGQRDNPHWTSDSKALQAFQKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSEEGLTFRGIP 834          
The following BLAST results are available for this feature:
BLAST of EG026522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOX6_ORYSJ1.169e-3046.75Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOXA_SOLLC1.867e-2843.05Lipoxygenase A OS=Solanum lycopersicum GN=LOX1.1 P... [more]
LOX1_HORVU1.867e-2842.04Lipoxygenase 1 OS=Hordeum vulgare GN=LOX1.1 PE=1 S... [more]
LOX1_SOLTU2.438e-2843.05Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]
LOX1_ARATH2.438e-2846.41Lipoxygenase 1 OS=Arabidopsis thaliana GN=LOX1 PE=... [more]
LOX3_ORYSJ9.264e-2842.04Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOXX_SOYBN2.696e-2743.62Seed lipoxygenase OS=Glycine max GN=LOX1.4 PE=1 SV... [more]
LOX1_ORYSJ1.133e-2538.85Lipoxygenase 1 OS=Oryza sativa subsp. japonica GN=... [more]
LOX3_PEA1.932e-2540.94Seed lipoxygenase-3 OS=Pisum sativum GN=LOX1.3 PE=... [more]
LOX1_SOYBN4.303e-2540.79Seed lipoxygenase-1 OS=Glycine max GN=LOX1.1 PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026522 ID=EG026522; Name=EG026522; organism=Citrus clementina; type=EST; length=590bp
GGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACATTTACG
GAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACT
GAAGATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAA
TGCACTTTTGAATACCTTCCCTTCCCAGATTCAAGCTACTAAAGTTATGG
CTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTATTTAGGA
AAAGAAATAGAGCCAGCATGGCGTGAGGATCCGGTTATAAATGCAGCATT
TGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTGATGCAA
GGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATGGTGCCA
TATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAAAGGAGT
TCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATCGCTCGA
ATGTTGTGTCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAATCAAAT
AAATTGCAGTTAATGTTGCTGTCGGTGTTATATTATTAAC
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