EG026522

Overview
NameEG026522
Unique NameEG026522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:2304..2893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EG026522 vs. ExPASy Swiss-Prot
Match: LOXB_PHAVU (Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.192e-20
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 2 
Query:    2 VTSGHHAAVNFGQYIYGGYFPNRPTTARCNIATEDPSDEQWKFFLEKPENALLNTFPSQIQATKVMAILDVLSTHSPDEEYLG-KEIEPAWREDPVINAAFEKFRGKLMELEGIIDARNADPKLRNRNGAGMVPYELLKPFSEPGVTGKGV 451
            + S  HAAVNFGQY YGG   NRPT +R  +   +    ++    + PE   L T   + +    + ++++LS H+ DE YLG ++    W  D     AF++F  KL E+E  +  +N D  LRNR G   +PY LL P SE G+T +G+
Sbjct:  593 IASALHAAVNFGQYPYGGLILNRPTISRRFMP--EKGSAEYAALAKNPEKEFLKTITGKKETLIDLTVIEILSRHASDEIYLGERDGGDHWTSDAGPLEAFKRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSEEGLTFRGI 741
The following BLAST results are available for this feature:
BLAST of EG026522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
LOXB_PHAVU3.192e-2037.09Lipoxygenase (Fragment) OS=Phaseolus vulgaris PE=2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1DH03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026522 ID=EG026522; Name=EG026522; organism=Citrus clementina; type=EST; length=590bp
GGTAACATCTGGTCACCACGCAGCTGTTAACTTCGGCCAATACATTTACG
GAGGCTATTTCCCCAATAGGCCAACCACTGCAAGATGCAACATTGCCACT
GAAGATCCATCTGATGAACAATGGAAATTCTTCCTTGAAAAACCTGAAAA
TGCACTTTTGAATACCTTCCCTTCCCAGATTCAAGCTACTAAAGTTATGG
CTATTCTTGATGTTTTATCGACTCATTCTCCTGATGAGGAGTATTTAGGA
AAAGAAATAGAGCCAGCATGGCGTGAGGATCCGGTTATAAATGCAGCATT
TGAAAAGTTTAGAGGCAAGTTAATGGAGCTTGAAGGGATTATTGATGCAA
GGAATGCAGATCCCAAGTTGAGGAATAGAAATGGAGCTGGGATGGTGCCA
TATGAGCTCTTGAAGCCATTTTCGGAACCTGGTGTTACAGGAAAAGGAGT
TCCGTACAGCATCTCTATCTAGAGTTGAAAATGTTGTTGCAATCGCTCGA
ATGTTGTGTCAATAAAAACTTTTGAGAATGAGTTCAAGAATGAATCAAAT
AAATTGCAGTTAATGTTGCTGTCGGTGTTATATTATTAAC
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