EG026532

Overview
NameEG026532
Unique NameEG026532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:665..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.312e-24
Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPSCH VI+ +W+PS  +  AGR+PGYG+ TNIINGG+ECG+G +  V +RIGF+  +C   G+ PG NLDCYNQR +
Sbjct:  233 PKPSCHAVIVGQWQPSDADRAAGRVPGYGVITNIINGGLECGRGQDARVADRIGFYQRYCNILGVNPGGNLDCYNQRSF 311          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.817e-24
Identity = 48/91 (52.75%), Postives = 65/91 (71.43%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 273
            PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L+   + +S
Sbjct:  237 PKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLLLSDLVTS 327          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.510e-24
Identity = 46/78 (58.97%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH+VI  +W PSA + +A R PGYG+ TNIINGGIECG+G N  V +RIGF+  +C    + PGDNLDCY+QR +
Sbjct:  167 KPSCHDVITGQWTPSAADASANRQPGYGVITNIINGGIECGKGQNPQVEDRIGFYRRYCTILNVAPGDNLDCYDQRNF 244          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.510e-24
Identity = 48/91 (52.75%), Postives = 64/91 (70.33%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM*SS 273
            PKPS H+VI   W PS+ +V A RLPGYG  TNIINGG+ECG+G +  V++RIGFF  +C   G+  G+NLDCY+Q P+G +L    + +S
Sbjct:  236 PKPSSHDVITSRWTPSSADVAARRLPGYGTVTNIINGGLECGRGQDSRVQDRIGFFKRYCDLLGVGYGNNLDCYSQTPFGNSLFLSDLVTS 326          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.110e-23
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPSCH V+  +W P+  +  AGR+PGYG+ TNIINGG+ECG G +  V +RIGF+  +C   G+  G NLDCYNQRP+
Sbjct:  243 PKPSCHAVMTGQWTPNGNDQAAGRVPGYGVVTNIINGGVECGHGADSRVADRIGFYKRYCDMLGVSYGANLDCYNQRPF 321          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.450e-23
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 240
            PKPSCH V   +W PSA +  AGR+PGYG+ TNIINGG+ECG G +D V +RIGF+  +C   G+    NLDCY+QRP+G
Sbjct:  246 PKPSCHAVATGQWTPSADDQAAGRVPGYGVITNIINGGLECGHGEDDRVADRIGFYKRYCDILGVSYDANLDCYSQRPFG 325          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPS H+VII  W PSA + +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PGDNLDCYNQR +
Sbjct:  173 KPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.894e-23
Identity = 47/78 (60.26%), Postives = 57/78 (73.08%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH+VI+  W PSA +  AGR+PGYG+ TNIINGGIECG G NDA  +RIG++  +C   G   G NLDCYNQR +
Sbjct:  182 KPSCHDVILGRWTPSAADTAAGRVPGYGVITNIINGGIECGVGQNDANVDRIGYYKRYCDMLGAGYGSNLDCYNQRNF 259          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.220e-23
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQSM 264
            PKPSCH VI   W PS  + +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G+NLDC NQRP+G  L+  ++
Sbjct:  227 PKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFGSGLLLDTI 314          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.511e-23
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 240
            PKPS H+VI   W PS  +   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG+NLDC NQRP+G
Sbjct:  167 PKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
The following BLAST results are available for this feature:
BLAST of EG026532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI2_BRANA1.312e-2458.23Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIT_PHAVU3.817e-2452.75Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIB_SOLLC6.510e-2458.97Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI5_PHAVU6.510e-2452.75Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI1_ORYSJ1.110e-2355.70Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI12_ORYSJ1.450e-2357.50Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIP_TOBAC1.894e-2360.26Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_ORYSJ1.894e-2360.26Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_VITVI4.220e-2352.27Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHID_SOLLC5.511e-2355.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026532 ID=EG026532; Name=EG026532; organism=Citrus clementina; type=EST; length=432bp
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAG
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