EG026532

Overview
NameEG026532
Unique NameEG026532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:665..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 7.198e-23
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPS H+VI   W PSA + +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC NQR +
Sbjct:  242 KPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.228e-22
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPS H VI  +W PS  +  AGR PG+G+ TNIINGG+ECG G +  V +RIGF+  +C   G+  GDNLDCYNQRP+
Sbjct:  187 PKPSSHAVITGKWSPSGADRAAGRAPGFGVITNIINGGLECGHGQDSRVADRIGFYKRYCDILGVGYGDNLDCYNQRPF 265          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.603e-22
Identity = 45/78 (57.69%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH+VI   W PSA + +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PGDNLDCYNQR +
Sbjct:  174 KPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.572e-22
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH VII +W PS  +  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  173 KPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.665e-22
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPS H VI  +W PS  +  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  187 PKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 102.834 bits (255), Expect = 6.093e-22
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C   G+  G+NLDCY+QRP+
Sbjct:  239 PKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 317          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.039e-21
Identity = 42/81 (51.85%), Postives = 60/81 (74.07%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQG-GNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYG 240
            PKPSCH+VI ++W PS  + ++GRLPGYG+ TNIINGG ECG+G   D  ++R+G++  +C  F +  GDN+ C +Q+PYG
Sbjct:  174 PKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.357e-21
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPS H VI  +W PS  +  AGR+PG+G+ TNI+NGGIECG G +  V +RIGF+  +C    +  G+NLDCYNQRP+
Sbjct:  242 PKPSSHAVITGQWSPSGTDRAAGRVPGFGVITNIVNGGIECGHGQDSRVADRIGFYKRYCDILRVGYGNNLDCYNQRPF 320          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.158e-21
Identity = 42/78 (53.85%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH VII +W PS  +  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G+NLDC NQ+ +
Sbjct:  173 KPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.271e-19
Identity = 38/78 (48.72%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            KPSCH+V++ E++P   +V A R  G+GL TNI+NGG+EC + G+  V NRIGF+  +C   G+  G NLDC +Q+P+
Sbjct:  213 KPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
The following BLAST results are available for this feature:
BLAST of EG026532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHIX_PEA7.198e-2357.69Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHIC_SECCE1.228e-2256.96Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHIT_PETHY1.603e-2257.69Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIA_SOLCI3.572e-2255.13Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHI2_HORVU4.665e-2255.7026 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHI1_HORVU6.093e-2254.4326 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI11_ORYSJ1.039e-2151.85Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SECCE1.357e-2154.43Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHIA_SOLLC5.158e-2153.85Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ1.271e-1948.72Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026532 ID=EG026532; Name=EG026532; organism=Citrus clementina; type=EST; length=432bp
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAG
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