EG026532

Overview
NameEG026532
Unique NameEG026532
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length432
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4062 contig Ccv1_Contig4062:665..1096. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.129e-18
Identity = 37/61 (60.66%), Postives = 49/61 (80.33%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCG 183
            PKPSCH+VII  W+PSA +  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  241 PKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 40/79 (50.63%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 PKPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PKPS H+VI   W PS+ +  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++            DNLDCYNQ+P+
Sbjct:  132 PKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYK-----------DNLDCYNQKPF 199          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 37/77 (48.05%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    7 PSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPY 237
            PSCHEVI  EW PS  ++ AGR PG+G+ TNII  G EC + G    +NRI ++  +C    + PGDNL C NQ  +
Sbjct:  228 PSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETF 304          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 261
            +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+  ++M+ S
Sbjct:  254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of EG026532 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    4 KPSCHEVIIDEWKPSAIEVNAGRLPGYGLTTNIINGGIECGQGGNDAVRNRIGFFTTFCGKFGIQPGDNLDCYNQRPYGLNLMAQS 261
            +PS H V+  +W P+  +  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q P+   +M+ S
Sbjct:  254 QPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
The following BLAST results are available for this feature:
BLAST of EG026532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
CHI4_SOLTU3.129e-1860.66Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIT_AVESA5.338e-1850.63Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI8_POPTR2.649e-1748.05Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ3.825e-1641.86Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.996e-1641.86Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2AD05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG026532 ID=EG026532; Name=EG026532; organism=Citrus clementina; type=EST; length=432bp
CCAAAGCCATCGTGCCACGAAGTCATTATCGACGAATGGAAACCATCAGC
AATTGAAGTAAACGCCGGCCGGCTTCCGGGATACGGTCTAACCACAAATA
TAATCAACGGTGGAATTGAATGTGGCCAAGGTGGGAATGACGCTGTACGC
AACCGTATTGGGTTCTTTACCACTTTCTGTGGCAAGTTTGGGATTCAGCC
TGGTGACAATCTTGATTGCTACAACCAACGGCCTTATGGCCTTAATCTGA
TGGCACAATCTATGTGATCATCATGATCAAGGTTTTAGTAAAATAAGCTT
AATAAAAGCTACTTAATAAAAACTTTAGATGTCACAGTTGTAGGTGGACA
ACTAAATTATTCGTTTGTTACGCTCTTATTGCAAGTAAATTAAATAAGAC
TGATCCAACATGGATCAATGAGTCTTCTCCAG
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