EH406135

Overview
NameEH406135
Unique NameEH406135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_LONON (60S ribosomal protein L38 OS=Lonomia obliqua GN=RpL38 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.789e-15
Identity = 37/55 (67.27%), Postives = 49/55 (89.09%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SV+IK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   15 ARRKDAKSVEIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ARTSF (60S ribosomal protein L38 OS=Artemia sanfranciscana GN=RPL38 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.948e-15
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+S KIK++ D  KFK+RCS++LYTL + DSEKA+KLK+SLPPGL V++L
Sbjct:   15 ARRKDAKSCKIKKNPDNTKFKLRCSRFLYTLVITDSEKAEKLKKSLPPGLQVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_CAEEL (60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.463e-15
Identity = 37/55 (67.27%), Postives = 47/55 (85.45%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+SVKIK++ +  KFKVRC+ YLYTL V D +KA+KLKQSLPPG+ V++L
Sbjct:   15 ARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_DROYA (60S ribosomal protein L38 OS=Drosophila yakuba GN=RpL38 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.456e-14
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:   15 ARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_DROME (60S ribosomal protein L38 OS=Drosophila melanogaster GN=RpL38 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.456e-14
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARR DAR+VKIK++    KFK+RCS++LYTL V D EKADK+KQSLPPGL V+++
Sbjct:   15 ARRSDARAVKIKKNPTNTKFKIRCSRFLYTLVVQDKEKADKIKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_OSTOS (60S ribosomal protein L38 OS=Ostertagia ostertagi GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.219e-13
Identity = 37/55 (67.27%), Postives = 46/55 (83.64%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            ARRKDA+ VKIK++   VKFKVRCS+YL+TL V D +KA+KLKQSLPPG+ V +L
Sbjct:   15 ARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSLPPGIQVIEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38A_SCHPO (60S ribosomal protein L38-1 OS=Schizosaccharomyces pombe GN=rpl38a PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.002e-12
Identity = 35/60 (58.33%), Postives = 50/60 (83.33%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRDV-VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 181
            ARRKDA S +IK++ +  VKFK+RCSKYLYTL V D++KA+KL+QSLPP L+V ++ +++
Sbjct:   15 ARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQSLPPDLTVTEVGKKA 74          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_NEUCR (60S ribosomal protein L38 OS=Neurospora crassa GN=rpl-38 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.734e-12
Identity = 33/60 (55.00%), Postives = 47/60 (78.33%), Query Frame = 2
Query:    8 RRKDARSVKIKRSRDV--VKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 181
            RRKDA + +IK+++    +KFKVRC KYLYTL + DS+KA+KLK SLPP L++ D+ +R+
Sbjct:   16 RRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKASLPPSLTIADVAKRN 75          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38B_SCHPO (60S ribosomal protein L38-2 OS=Schizosaccharomyces pombe GN=rpl38b PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.662e-11
Identity = 31/60 (51.67%), Postives = 49/60 (81.67%), Query Frame = 2
Query:    5 ARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL*RRS 181
            A R DA S ++K++++  VKFK+RCS+YLYTL V D++KA+KL+QSLPP L+V ++ +++
Sbjct:   15 AHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQSLPPALTVTEVGKKA 74          
The following BLAST results are available for this feature:
BLAST of EH406135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL38_LONON3.789e-1567.2760S ribosomal protein L38 OS=Lonomia obliqua GN=Rp... [more]
RL38_ARTSF4.948e-1567.2760S ribosomal protein L38 OS=Artemia sanfranciscan... [more]
RL38_CAEEL6.463e-1567.2760S ribosomal protein L38 OS=Caenorhabditis elegan... [more]
RL38_DROYA2.456e-1465.4560S ribosomal protein L38 OS=Drosophila yakuba GN=... [more]
RL38_DROME2.456e-1465.4560S ribosomal protein L38 OS=Drosophila melanogast... [more]
RL38_OSTOS1.219e-1367.2760S ribosomal protein L38 OS=Ostertagia ostertagi ... [more]
RL38A_SCHPO3.002e-1258.3360S ribosomal protein L38-1 OS=Schizosaccharomyces... [more]
RL38_NEUCR8.734e-1255.0060S ribosomal protein L38 OS=Neurospora crassa GN=... [more]
RL38B_SCHPO5.662e-1151.6760S ribosomal protein L38-2 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406135 ID=EH406135; Name=EH406135; organism=Citrus clementina; type=EST; length=462bp
TACTGCAAGAAGGAAGGATGCCCGTTCAGTCAAAATCAAGAGGAGCAGGG
ATGTTGTTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGT
GTTTTTGACTCCGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGG
TTTGAGCGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGAT
CAGAAGTTGATGAAATTTGTTTCATACTTTCTACCTCGAAATTGTTAGGC
CTTACAAATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTT
ATTAGTTTTCTTGGGAATTTTCTCCAAATATTTCGTTTGCATGAGTTTGA
GTTGTATATCACCTTAGTGTTTTTTTATCGATCAAGTCGGAACATGTCTA
TTTATTTTGTGGCCTAATTATTATATTTCTTATTTATTAGTAATCTAAGC
ACAAGTCCCCCG
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