EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.895e-28
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  296 HETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.895e-28
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HETADIN FSWGVANRG+SIRVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWK
Sbjct:  296 HETADINVFSWGVANRGSSIRVGRDTEKDGKGYFEDRRPASNMDPYVVTSMIAETTILWK 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.895e-28
Identity = 57/61 (93.44%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRP+SNMDPYVVTSMIA+TTILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPSSNMDPYVVTSMIADTTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_MAIZE (Glutamine synthetase root isozyme 1 OS=Zea mays GN=GLN6 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.860e-27
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 179
            HETADINTF WGVANRGASIRVGRDTE+EGKGYFEDRRPASNMDPYVVT MIAETTILW
Sbjct:  296 HETADINTFKWGVANRGASIRVGRDTEREGKGYFEDRRPASNMDPYVVTGMIAETTILW 354          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.429e-27
Identity = 56/61 (91.80%), Postives = 58/61 (95.08%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTF WGVANRGASIRVGRDTE+ GKGYFEDRRPASNMDPY VTSMIAE+TILWKP
Sbjct:  296 HETADINTFLWGVANRGASIRVGRDTEQAGKGYFEDRRPASNMDPYTVTSMIAESTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.429e-27
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HETADINTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL
Sbjct:  296 HETADINTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 353          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 55/61 (90.16%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINT SWGVANRGAS+RVGR+TE+ GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  296 HETADINTSSWGVANRGASVRVGRETEQNGKGYFEDRRPASNMDPYVVTSMIAQTTILWKP 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP*KTN 197
            HETADINTF WGV NRGAS+RVGRDTEKEGKGYFEDRRPASNMDPYVVT +IAETT+LW+P  +N
Sbjct:  295 HETADINTFVWGVPNRGASVRVGRDTEKEGKGYFEDRRPASNMDPYVVTCLIAETTMLWEPSHSN 359          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.173e-27
Identity = 54/61 (88.52%), Postives = 59/61 (96.72%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADIN F WGVANRGAS+RVGRDTEK+GKGYFEDRRPASNMDPY+VT+MIAETTILW+P
Sbjct:  298 HETADINNFVWGVANRGASVRVGRDTEKDGKGYFEDRRPASNMDPYLVTAMIAETTILWEP 358          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.582e-26
Identity = 54/58 (93.10%), Postives = 58/58 (100.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HETADINTFSWGVA+RGAS+RVGRDTEKEGKGYFEDRRP+SNMDPY+VTSMIAETTIL
Sbjct:  296 HETADINTFSWGVADRGASVRVGRDTEKEGKGYFEDRRPSSNMDPYLVTSMIAETTIL 353          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA4_PEA4.895e-2895.00Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA3_PEA4.895e-2895.00Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA1_MEDSA4.895e-2893.44Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA1_MAIZE1.860e-2794.92Glutamine synthetase root isozyme 1 OS=Zea mays GN... [more]
GLN14_ARATH2.429e-2791.80Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN13_ARATH2.429e-2798.28Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA3_HORVU3.173e-2790.16Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLNA2_MAIZE3.173e-2784.62Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN13_ORYSJ3.173e-2788.52Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLN15_ARATH4.582e-2693.10Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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