EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_LUPLU (Glutamine synthetase nodule isozyme OS=Lupinus luteus PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.984e-26
Identity = 55/58 (94.83%), Postives = 57/58 (98.28%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HETADI+TF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+L
Sbjct:  296 HETADISTFFWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLL 353          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 5.984e-26
Identity = 52/61 (85.25%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVTS++AE+T+LW+P
Sbjct:  353 HETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTSLLAESTLLWEP 413          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25
Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA INTFSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  352 HETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 412          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.274e-25
Identity = 54/61 (88.52%), Postives = 58/61 (95.08%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETADINTFSWGVANRGAS+ VG+ TE+ GKGYFEDRRPASNMDPYVVTSMIAETTI+WKP
Sbjct:  296 HETADINTFSWGVANRGASVAVGQ-TEQNGKGYFEDRRPASNMDPYVVTSMIAETTIVWKP 355          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.879e-25
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I+ FSWGVANRG SIRVGRDTEK+GKGY EDRRPASNMDPY+VTS++AETT+LW+P
Sbjct:  352 HETASIDQFSWGVANRGCSIRVGRDTEKKGKGYLEDRRPASNMDPYIVTSLLAETTLLWEP 412          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA IN FSWGVANRG SIRVGRDTEK GKGY EDRRPASNMDPYVVT+++AE+T+LW+P
Sbjct:  354 HETASINDFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEP 414          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 50/61 (81.97%), Postives = 57/61 (93.44%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I++FSWGVA+RG SIRVGRDTEKEGKGY EDRRPASNMDPYVVT ++AETT+LW+P
Sbjct:  356 HETASIDSFSWGVADRGCSIRVGRDTEKEGKGYLEDRRPASNMDPYVVTGLLAETTLLWEP 416          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.616e-25
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HETA I+ FSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNM+PYVVTSMIAETTIL
Sbjct:  295 HETASIHKFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMEPYVVTSMIAETTIL 352          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.641e-25
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I TFSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPY+VT ++AETTILW+P
Sbjct:  347 HETASIGTFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYIVTGLLAETTILWQP 407          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.474e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 185
            HETA I+ FSWGVANRG SIRVGRDTE +GKGY EDRRPASNMDPYVVT+++AETTILW+P
Sbjct:  352 HETASIDNFSWGVANRGCSIRVGRDTEAKGKGYLEDRRPASNMDPYVVTALLAETTILWEP 412          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_LUPLU5.984e-2694.83Glutamine synthetase nodule isozyme OS=Lupinus lut... [more]
GLNA4_PHAVU5.984e-2685.25Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MEDSA1.333e-2583.61Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA4_MAIZE2.274e-2588.52Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNAC_BRANA3.879e-2581.97Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_PEA6.616e-2581.97Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA6.616e-2581.97Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA1_DAUCA6.616e-2591.38Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNAC_MAIZE8.641e-2581.97Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ORYSJ1.474e-2481.97Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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