EH406143

Overview
NameEH406143
Unique NameEH406143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length454
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.251e-15
Identity = 42/60 (70.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HET  I TFS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETTIL K
Sbjct:  295 HETGHIGTFSSGVANRGASIRVPRHVANKGYGYLEDRRPASNIDPYRVTGIIIETTILDK 354          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.633e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA + +FS GVANRGASIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  297 HETASMTSFSSGVANRGASIRIPRPVAKEGFGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_CRYNE (Glutamine synthetase OS=Cryptococcus neoformans GN=GLN1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.133e-15
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HETA + TFS GVANRGASIR+ R    +G GY EDRRPASN+DPY VT+++ ETT+L
Sbjct:  299 HETASMTTFSAGVANRGASIRIPRHVGAQGYGYLEDRRPASNVDPYRVTAILVETTVL 356          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 37/55 (67.27%), Postives = 44/55 (80.00%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HETA +  FS GVANRG+SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  297 HETASMTAFSSGVANRGSSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMCET 351          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.786e-15
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VTS+I ETT+L
Sbjct:  295 HETGHIGAFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTSIIVETTLL 352          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAET 167
            HET  I +FS GVANRG SIR+ R   KEG GYFEDRRPASN+DPY+VT ++ ET
Sbjct:  288 HETGSIGSFSSGVANRGCSIRIPRSVAKEGYGYFEDRRPASNIDPYLVTGIMTET 342          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_XENLA (Glutamine synthetase OS=Xenopus laevis GN=glul PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.639e-15
Identity = 38/58 (65.52%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET+ I+ FS GVANRGASIR+ R   +EG GYFEDRRPA+N DPY VT  +  TTIL
Sbjct:  304 HETSSIHEFSAGVANRGASIRIPRQVGQEGYGYFEDRRPAANCDPYAVTEALVRTTIL 361          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_GIBFU (Glutamine synthetase OS=Gibberella fujikuroi GN=GLN1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.752e-15
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE 164
            HET  I++FSWGVANRG SIRV R+T  +G GYFEDRRPASN DPY VT ++ +
Sbjct:  296 HETGSIDSFSWGVANRGTSIRVPRETAAKGYGYFEDRRPASNADPYRVTKVLLQ 349          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_SUIBO (Glutamine synthetase OS=Suillus bovinus GN=GLNA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 6.207e-15
Identity = 40/60 (66.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 182
            HET  I  FS GVANRGASIRV R    +G GY EDRRPASN+DPY VT +I ETT+L K
Sbjct:  295 HETGHIGDFSSGVANRGASIRVPRHVAAQGYGYLEDRRPASNIDPYRVTGIIVETTVLDK 354          
BLAST of EH406143 vs. ExPASy Swiss-Prot
Match: GLNA_MOUSE (Glutamine synthetase OS=Mus musculus GN=Glul PE=1 SV=6)

HSP 1 Score: 78.5666 bits (192), Expect = 1.383e-14
Identity = 37/58 (63.79%), Postives = 44/58 (75.86%), Query Frame = 3
Query:    3 HETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTIL 176
            HET++IN FS GVANRGASIR+ R   +E KGYFEDRRP++N DPY VT  I  T +L
Sbjct:  304 HETSNINDFSAGVANRGASIRIPRTVGQEKKGYFEDRRPSANCDPYAVTEAIVRTCLL 361          
The following BLAST results are available for this feature:
BLAST of EH406143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
GLNA_AMAMU1.251e-1570.00Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_CANGA1.633e-1569.09Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_CRYNE2.133e-1565.52Glutamine synthetase OS=Cryptococcus neoformans GN... [more]
GLNA_YEAST2.786e-1567.27Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]
GLNA_HEBCY2.786e-1568.97Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_YARLI3.639e-1567.27Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_XENLA3.639e-1565.52Glutamine synthetase OS=Xenopus laevis GN=glul PE=... [more]
GLNA_GIBFU4.752e-1566.67Glutamine synthetase OS=Gibberella fujikuroi GN=GL... [more]
GLNA_SUIBO6.207e-1566.67Glutamine synthetase OS=Suillus bovinus GN=GLNA PE... [more]
GLNA_MOUSE1.383e-1463.79Glutamine synthetase OS=Mus musculus GN=Glul PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406143 ID=EH406143; Name=EH406143; organism=Citrus clementina; type=EST; length=454bp
GACATGAAACTGCAGATATCAACACTTTCTCTTGGGGTGTCGCTAACAGA
GGTGCCTCCATTCGCGTTGGTCGTGACACTGAGAAAGAAGGAAAGGGATA
CTTTGAAGACAGAAGGCCAGCTTCAAACATGGACCCATATGTTGTGACTT
CAATGATCGCTGAAACCACCATTCTCTGGAAGCCTTAGAAAACAAACTTG
AGCATCGATGACGAAGAAGAAATCGAGGGAAAATGAAAGCTTAAATTGAA
CCCACCACAAAAATAATTCTTATGTTTTTATCTTTGTAATGTGTCTATGC
ATTTAAGTCTGTTGTTTGAACTTGTTCCTTGCCATTCAAAACTGTACTCC
GTTTCTCTTGTTCTTCATTCTTTGGGATGCTCGGTTGTGATTACTATATT
ATAGTTTAAAACTACTTCTCCTCTGTTTAAAAAATAAAGAAGATTTATAG
CGTA
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