EH406144

Overview
NameEH406144
Unique NameEH406144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SMO2A_XENLA (Small ubiquitin-related modifier 2-A OS=Xenopus laevis GN=sumo2-A PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.575e-18
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO2_XENTR (Small ubiquitin-related modifier 2 OS=Xenopus tropicalis GN=sumo2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SMO2B_XENLA (Small ubiquitin-related modifier 2-B OS=Xenopus laevis GN=sumo2-B PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.056e-18
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLNKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO2_DANRE (Small ubiquitin-related modifier 2 OS=Danio rerio GN=sumo2 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.686e-18
Identity = 48/90 (53.33%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            P+E  K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLTMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_SPETR (Small ubiquitin-related modifier 1 OS=Spermophilus tridecemlineatus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_RAT (Small ubiquitin-related modifier 1 OS=Rattus norvegicus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_PONAB (Small ubiquitin-related modifier 1 OS=Pongo abelii GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_PIG (Small ubiquitin-related modifier 1 OS=Sus scrofa GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_MOUSE (Small ubiquitin-related modifier 1 OS=Mus musculus GN=Sumo1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_HUMAN (Small ubiquitin-related modifier 1 OS=Homo sapiens GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
The following BLAST results are available for this feature:
BLAST of EH406144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMO2A_XENLA1.575e-1853.33Small ubiquitin-related modifier 2-A OS=Xenopus la... [more]
SUMO2_XENTR2.056e-1853.33Small ubiquitin-related modifier 2 OS=Xenopus trop... [more]
SMO2B_XENLA2.056e-1853.33Small ubiquitin-related modifier 2-B OS=Xenopus la... [more]
SUMO2_DANRE2.686e-1853.33Small ubiquitin-related modifier 2 OS=Danio rerio ... [more]
SUMO1_SPETR1.021e-1745.36Small ubiquitin-related modifier 1 OS=Spermophilus... [more]
SUMO1_RAT1.021e-1745.36Small ubiquitin-related modifier 1 OS=Rattus norve... [more]
SUMO1_PONAB1.021e-1745.36Small ubiquitin-related modifier 1 OS=Pongo abelii... [more]
SUMO1_PIG1.021e-1745.36Small ubiquitin-related modifier 1 OS=Sus scrofa G... [more]
SUMO1_MOUSE1.021e-1745.36Small ubiquitin-related modifier 1 OS=Mus musculus... [more]
SUMO1_HUMAN1.021e-1745.36Small ubiquitin-related modifier 1 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406144 ID=EH406144; Name=EH406144; organism=Citrus clementina; type=EST; length=739bp
GGATCTCCGCGGAGATAAAACCCAATTTCGTTTTTTTATTTGTTTAATTT
ATTTTTTCTTTACAAAAACGATAGCTAATTACAACTGTCGTTCACTTGCT
CGAGTCTACGCTCCCAAGGCTTTTTTAAAGGGAAAGCCCTAATCTCATCA
TCACAACACAAACGAAGAGATCGAAAGAGCAAGAGATAGAGAGAAAGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGAGACGAAGCAAAAGAGAGGATGTCA
GGCGTCACGAACACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATC
GGCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCT
TCAGGATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGT
GATAGACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGCCG
CCGTCTTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTG
ATGAGATTGATGCCATGCTGCACCAAACCGGTGGAATGCTGATGTTCTAA
TTATGTAATGCTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTAT
TTATGGATGGATGTAAGTTATGCAGAGGCTCAAGATTGTGTATTTGTGAT
CTACACCATTATGTTTGGATTACCTAAGTATGTAGCTCTTTCTTCAAGAG
CCCTGATCGTTGCGGTTTATATAGAAGCTAGAATTTAAA
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