EH406144

Overview
NameEH406144
Unique NameEH406144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_CHICK (Small ubiquitin-related modifier 1 OS=Gallus gallus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSAEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRITDNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_BOVIN (Small ubiquitin-related modifier 1 OS=Bos taurus GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.021e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_CERNI (Small ubiquitin-related modifier 1 OS=Cervus nippon GN=SUMO1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.333e-17
Identity = 44/97 (45.36%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +  +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+    TP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYHEQTGG 97          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_XENTR (Small ubiquitin-related modifier 1 OS=Xenopus tropicalis GN=sumo1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSA-HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSSEDLGDKKEGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SMO1B_XENLA (Small ubiquitin-related modifier 1-B OS=Xenopus laevis GN=sumo1-B PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 45/98 (45.92%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSA-HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            MS     P  ED     +   +I LKV GQD +E+ F++K +T LKKL  +YC RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG
Sbjct:    1 MSDQEAKPSSEDLGDKKEGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGG 98          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO_CAEEL (Small ubiquitin-related modifier OS=Caenorhabditis elegans GN=smo-1 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 41/88 (46.59%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  272 EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 535
            ++  +  D + +I +KV GQD NEV FR+K  T + KL  +Y DR  V +NS+ FLFDGRR+  + TP  LEMED D I+    Q GG
Sbjct:    3 DDAAQAGDNAEYIKIKVVGQDSNEVHFRVKYGTSMAKLKKSYADRTGVAVNSLRFLFDGRRINDDDTPKTLEMEDDDVIEVYQEQLGG 90          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO4_PIG (Small ubiquitin-related modifier 4 OS=Sus scrofa GN=SUMO4 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.640e-17
Identity = 44/91 (48.35%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 538
            P+E  K  N+   HINLKV GQDG+   F+I+R T L KLM AYC+RQ + +  I F  DG+ +    TP +LE+ED D ID +  QTGG+
Sbjct:    6 PKEGVKTENND--HINLKVAGQDGSVAQFKIRRHTPLSKLMKAYCERQGLSIRQIRFRVDGQPINETHTPAQLELEDEDTIDVLQQQTGGV 94          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO4_HUMAN (Small ubiquitin-related modifier 4 OS=Homo sapiens GN=SUMO4 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.474e-16
Identity = 45/91 (49.45%), Postives = 56/91 (61.54%), Query Frame = 2
Query:  266 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 538
            P EE K  N+   HINLKV GQDG+ V F+IKR T L KLM AYC+ + + +  I F F G+ + G   P +LEMED D ID     TGG+
Sbjct:    6 PTEEVKTENNN--HINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCEPRGLSMKQIRFRFGGQPISGTDKPAQLEMEDEDTIDVFQQPTGGV 94          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SUMO1_ONCMY (Small ubiquitin-related modifier 1 OS=Oncorhynchus mykiss GN=sumo1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.283e-16
Identity = 41/98 (41.84%), Postives = 58/98 (59.18%), Query Frame = 2
Query:  245 MSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 538
            MS     P  +D        +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V ++++ FLF+G+R+    TP EL MED D I+    QTGG+
Sbjct:    1 MSDTDTKPSGQDGGDQKDGEYIKLKVIGQDNSEIHFKVKMTTHLKKLKESYSQRQGVHMSTLRFLFEGQRISDNHTPKELGMEDEDVIEVYQEQTGGL 98          
BLAST of EH406144 vs. ExPASy Swiss-Prot
Match: SMO1A_XENLA (Small ubiquitin-related modifier 1-A OS=Xenopus laevis GN=sumo1-A PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.288e-16
Identity = 46/102 (45.10%), Postives = 60/102 (58.82%), Query Frame = 2
Query:  245 MSGVTNTPQEEDK-KPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGMLMF 547
            MS     P  ED     D   +I LKV GQD +E+ F++K +T LKKL  +Y  RQ V +NS+ FLF+G+R+   QTP EL ME+ D I+    QTGG   F
Sbjct:    1 MSDQEAKPSSEDLGDKKDGGDYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYRQRQGVPMNSLRFLFEGQRISDHQTPKELGMEEEDVIEVYQEQTGGHSTF 102          
The following BLAST results are available for this feature:
BLAST of EH406144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SUMO1_CHICK1.021e-1745.36Small ubiquitin-related modifier 1 OS=Gallus gallu... [more]
SUMO1_BOVIN1.021e-1745.36Small ubiquitin-related modifier 1 OS=Bos taurus G... [more]
SUMO1_CERNI1.333e-1745.36Small ubiquitin-related modifier 1 OS=Cervus nippo... [more]
SUMO1_XENTR3.878e-1745.92Small ubiquitin-related modifier 1 OS=Xenopus trop... [more]
SMO1B_XENLA3.878e-1745.92Small ubiquitin-related modifier 1-B OS=Xenopus la... [more]
SUMO_CAEEL8.640e-1746.59Small ubiquitin-related modifier OS=Caenorhabditis... [more]
SUMO4_PIG8.640e-1748.35Small ubiquitin-related modifier 4 OS=Sus scrofa G... [more]
SUMO4_HUMAN1.474e-1649.45Small ubiquitin-related modifier 4 OS=Homo sapiens... [more]
SUMO1_ONCMY3.283e-1641.84Small ubiquitin-related modifier 1 OS=Oncorhynchus... [more]
SMO1A_XENLA4.288e-1645.10Small ubiquitin-related modifier 1-A OS=Xenopus la... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AG12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406144 ID=EH406144; Name=EH406144; organism=Citrus clementina; type=EST; length=739bp
GGATCTCCGCGGAGATAAAACCCAATTTCGTTTTTTTATTTGTTTAATTT
ATTTTTTCTTTACAAAAACGATAGCTAATTACAACTGTCGTTCACTTGCT
CGAGTCTACGCTCCCAAGGCTTTTTTAAAGGGAAAGCCCTAATCTCATCA
TCACAACACAAACGAAGAGATCGAAAGAGCAAGAGATAGAGAGAAAGAGA
AAGAGAGAGAGAGAGAGAGAGAGAGAGACGAAGCAAAAGAGAGGATGTCA
GGCGTCACGAACACTCCGCAAGAGGAAGATAAGAAGCCCAACGATCAATC
GGCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCT
TCAGGATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGT
GATAGACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGCCG
CCGTCTTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTG
ATGAGATTGATGCCATGCTGCACCAAACCGGTGGAATGCTGATGTTCTAA
TTATGTAATGCTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTAT
TTATGGATGGATGTAAGTTATGCAGAGGCTCAAGATTGTGTATTTGTGAT
CTACACCATTATGTTTGGATTACCTAAGTATGTAGCTCTTTCTTCAAGAG
CCCTGATCGTTGCGGTTTATATAGAAGCTAGAATTTAAA
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