EH406239

Overview
NameEH406239
Unique NameEH406239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACC4 (50S ribosomal protein L2 OS=Bacillus cereus (strain B4264) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_BACC2 (50S ribosomal protein L2 OS=Bacillus cereus (strain G9842) GN=rplB PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.543e-34
Identity = 74/128 (57.81%), Postives = 94/128 (73.44%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCS-LTPWGKPCKSGYKT 385
            GT++HNIE+ PG+GG+LVR+AGTSA++L +    + LVRL SG  +L+ + CRA+IG V N  H   K+ KAG+SRWLG+RP VRG  MNPVDHPHGGGEGRS      GR S ++PWGKP   G+KT
Sbjct:  138 GTVVHNIELKPGRGGQLVRSAGTSAQVLGKE-GKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLGKRPTVRGSVMNPVDHPHGGGEGRSPI----GRKSPMSPWGKP-TLGFKT 259          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_RHORT (50S ribosomal protein L2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 71/129 (55.04%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTIIHN+E+ PG+GG+L R+AG  A+++ +  + +  +RL SG  +L+   C AT+G VSNP +  +KL KAG+SRW+GRRP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G +T S
Sbjct:  138 GTIIHNVEMKPGKGGQLARSAGCYAQLIGKD-AGYAQLRLSSGELRLVRGECLATVGAVSNPDNQNEKLGKAGRSRWMGRRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKRTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_METSB (50S ribosomal protein L2 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 72/129 (55.81%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTI+HNIE+  G+GG +VR+AGT A+++      + ++RL SG ++LI  +C AT+G VSNP H    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIVHNIEMKIGKGGAMVRSAGTFAQVVGRD-QGYVIIRLNSGEQRLIHGQCFATVGAVSNPDHMNASIGKAGRSRWLGRRPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_PARL1 (50S ribosomal protein L2 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTI+HN+E+ PG+GG++ R+AGT  +++      + L+RL SG ++++   C A+IG VSNP H    + KAG++RWLG+RP VRGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT
Sbjct:  138 GTIVHNVEMKPGKGGQIARSAGTYVQLVGRD-QGYALLRLSSGEQRMVPATCMASIGAVSNPDHSNITIAKAGRNRWLGKRPHVRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_HALOH (50S ribosomal protein L2 OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 70/119 (58.82%), Postives = 86/119 (72.27%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGK 361
            GTIIHNIE+ PG+GG+L RAAGT A+IL +    +  ++LPSG  +LI   C+ATIG V N  H    + KAG+ RWLG+RP VRGVAMNPVDHPHGGGEGR+ +    GR  +TPWGK
Sbjct:  138 GTIIHNIELKPGKGGQLARAAGTMAQILAKE-GKYAHIKLPSGEVRLISLECKATIGQVGNIDHENISIGKAGRKRWLGKRPHVRGVAMNPVDHPHGGGEGRTST----GRHPVTPWGK 251          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_DESMR (50S ribosomal protein L2 OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 74/127 (58.27%), Postives = 94/127 (74.02%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT++HNIE+NPG+GG++ RAAGT A+++ +    + L+RLPSG  + + + C ATIG V N  H    + KAG++RWLG+RP VRGVAMNPVDHP GGGEG  KSSG  GR  +TPWGKP K GYKT
Sbjct:  138 GTLLHNIELNPGRGGQMCRAAGTYAQLVAKE-GKYALLRLPSGEVRNVLSTCLATIGQVGNVMHENISIGKAGRNRWLGKRPEVRGVAMNPVDHPLGGGEG--KSSG--GRHPVTPWGKPTK-GYKT 258          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_HYDS0 (50S ribosomal protein L2 OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=rplB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.626e-33
Identity = 74/127 (58.27%), Postives = 89/127 (70.08%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GT IHNIE+NPG+G KLVRAAG SA+++ +    +  VRLPSG  +LI+ +C ATIG V    H   KL KAG+SRWLG RP VRG AMNPVDHPHGGGEG++K     G+   +PWG   K GYKT
Sbjct:  148 GTFIHNIELNPGRGAKLVRAAGLSAQVIGK-IEGYAQVRLPSGEVRLINDKCMATIGVVGLAEHELVKLGKAGRSRWLGMRPNVRGTAMNPVDHPHGGGEGKTK-----GKHPESPWGWKTK-GYKT 267          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_RHOPB (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB18) GN=rplB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.736e-33
Identity = 71/129 (55.04%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKTAS 391
            GTI+HN+E+  G+GG++ R+AGT A+++      + +VRL SG ++L+  RC ATIG VSNP H    + KAG+SRWLGR+P  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K G KT S
Sbjct:  138 GTIVHNVELKIGKGGQIARSAGTYAQLVGRD-HDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRSRWLGRKPHNRGVTMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GKKTRS 260          
BLAST of EH406239 vs. ExPASy Swiss-Prot
Match: RL2_GRABC (50S ribosomal protein L2 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rplB PE=3 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.736e-33
Identity = 70/127 (55.12%), Postives = 90/127 (70.87%), Query Frame = 2
Query:    5 GTIIHNIEVNPGQGGKLVRAAGTSAKILKEPTSSFCLVRLPSGNEKLIDTRCRATIGTVSNPSHGAKKLRKAGQSRWLGRRPVVRGVAMNPVDHPHGGGEGRSKSSGNHGRCSLTPWGKPCKSGYKT 385
            GTIIHNIE+ PG GGK+ R+AGT A+++ +  + +  ++L SG  +++   C AT+G VSNP +    + KAG+SRWLGRRP  RGV MNPVDHPHGGGEGR+      GR  +TPWGKP K GYKT
Sbjct:  138 GTIIHNIEMKPGAGGKIARSAGTYAQLVGKD-AGYAQIKLMSGELRVVRAECYATVGAVSNPDNSNIHIGKAGRSRWLGRRPHNRGVVMNPVDHPHGGGEGRTSG----GRHPVTPWGKPTK-GYKT 258          
The following BLAST results are available for this feature:
BLAST of EH406239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACC49.543e-3457.8150S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACC29.543e-3457.8150S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_RHORT2.126e-3355.0450S ribosomal protein L2 OS=Rhodospirillum rubrum ... [more]
RL2_METSB2.126e-3355.8150S ribosomal protein L2 OS=Methylocella silvestri... [more]
RL2_PARL12.777e-3352.7650S ribosomal protein L2 OS=Parvibaculum lavamenti... [more]
RL2_HALOH2.777e-3358.8250S ribosomal protein L2 OS=Halothermothrix orenii... [more]
RL2_DESMR2.777e-3358.2750S ribosomal protein L2 OS=Desulfovibrio magnetic... [more]
RL2_HYDS03.626e-3358.2750S ribosomal protein L2 OS=Hydrogenobaculum sp. (... [more]
RL2_RHOPB4.736e-3355.0450S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_GRABC4.736e-3355.1250S ribosomal protein L2 OS=Granulibacter bethesde... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406239 ID=EH406239; Name=EH406239; organism=Citrus clementina; type=EST; length=716bp
GCGGGGGACCATCATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCA
AGCTAGTTAGAGCTGCGGGGACGTCAGCCAAGATTTTGAAAGAACCCACT
TCAAGCTTCTGTTTAGTAAGACTACCTTCTGGTAATGAGAAACTGATTGA
CACTAGATGTCGAGCCACCATTGGTACAGTGTCTAACCCCAGCCATGGAG
CTAAGAAGCTTAGGAAGGCTGGTCAGAGCCGTTGGTTGGGTCGAAGACCT
GTGGTTAGAGGAGTAGCCATGAATCCAGTTGATCATCCTCATGGTGGAGG
TGAGGGACGAAGCAAAAGTAGTGGTAACCATGGACGGTGTTCACTTACAC
CTTGGGGCAAGCCTTGCAAGTCTGGGTATAAAACTGCATCTCCTAAGAAG
AAAAAGAAATTAGCCTTCTGATAATATTGTCCTTTTGTGCTAGTGAGCAT
TTTTAGTATTGTTACATTATTTTGTTTTCTTTGCAGTTAGTTTTTATCCA
GTTTTAACCGATCAATAATGAAACTGAAGTTTAACTTCCGATTGAACTTA
TTGTCATCTAGTTTTACTCTTCTGTCATTTCAATTTAGCATGATTCAAGA
TGCTGCATTCTGTGCCTGGAACTTGTAACCGGGAAAGAGAGGTAATATGG
GTTAGAATATAGATTTTGTGTTTTGCTTTGTCAGGTTTAGAGATACTCTG
TTCTTTTTCATTTGTA
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