EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CLOK1 (Threonyl-tRNA synthetase OS=Clostridium kluyveri (strain NBRC 12016) GN=thrS PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.813e-49
Identity = 85/177 (48.02%), Postives = 125/177 (70.62%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKID  ++D +GR WQC T+Q+DF +P++FD+ Y+ ++ EK RP+MIHR V GS+ERF G+LIEHYAG FP W++P+Q +V+ +TD Q +Y  EV K LK N IR E     E++   IR A+  K+P M ++G KE+  + ++VRSR  G++G M ++DFI ++K   + +
Sbjct:  457 GAFYGPKIDFHLKDCIGRTWQCGTVQLDFQMPEKFDLNYIGADGEKHRPVMIHRVVFGSIERFIGILIEHYAGAFPAWIAPVQVQVMNITDAQADYVAEVAKTLKENNIRVECDIRNEKIGYKIREAQMHKVPYMIILGDKEMKDKNISVRSRKEGDIGAMSLEDFILKLKEEIDKK 633          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_NATTJ (Threonyl-tRNA synthetase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=thrS PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.980e-49
Identity = 86/171 (50.29%), Postives = 128/171 (74.85%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GAFYGPKID ++EDA+GR WQCSTIQ+DF LP+RFD+ Y+  + +K RP+MIHR + G++ERFF +LIEHY G FPLWL+P QA ++P+ D  +EY  ++ K+L++ GIRA++    E++   IR+A+ +K+P M +VG  EV+ +TV+VR+R  G++G+  V + +  IK
Sbjct:  459 GAFYGPKIDFQLEDAIGRSWQCSTIQLDFLLPERFDLTYIGEDGQKHRPVMIHRVIYGAIERFFALLIEHYEGKFPLWLAPRQAVIIPIADRHMEYGKDITKQLESEGIRADLDQRNEKIGYKIRDAQLKKVPYMLIVGDDEVENKTVSVRTREDGDIGSKSVAELVDEIK 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_GEOSM (Threonyl-tRNA synthetase OS=Geobacter sp. (strain M21) GN=thrS PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.495e-49
Identity = 92/176 (52.27%), Postives = 126/176 (71.59%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATEN 530
            GAFYGPKID+K+ DAL R+WQC+TIQ DF LP+RFD+ YVD++ EKKRP+M+HR +LG++ERF GVLIEH+AG+FP WL+P+QA ++ VTD Q+ Y      KL+  GIR +     E+L   IR A+ QKIP M VVG KEV++  +  R R G  L +M  + FI+ I++  ++
Sbjct:  459 GAFYGPKIDIKLRDALDRRWQCATIQCDFTLPERFDLTYVDADGEKKRPVMVHRVILGAIERFIGVLIEHFAGNFPTWLAPVQATIVTVTDNQIPYAQAAFDKLRAAGIRVQKDFRNEKLGFKIREAQLQKIPYMLVVGDKEVESGMLAPRFRDGKNLESMTPEQFITFIENEVKS 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESDG (Threonyl-tRNA synthetase OS=Desulfovibrio desulfuricans (strain G20) GN=thrS PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.893e-48
Identity = 90/175 (51.43%), Postives = 122/175 (69.71%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 527
            GAFYGPKID+K+ D LGR+WQC+T+Q DF LP RFD+VY+  + E+ RP+M+HR +LGS+ERF GVL EH+AG FP WL+P+QAR+L VTD Q E+  E    L   GIR E+    E+L   +R A+ +KIP + V+G KEV+A+ V VR R G  LG   +D+ +  I++  E
Sbjct:  457 GAFYGPKIDVKLRDCLGREWQCATVQCDFTLPDRFDLVYIGQDGERHRPVMVHRVILGSVERFIGVLTEHFAGAFPTWLAPVQARLLTVTDAQNEFAEEARAALMAQGIRVEVDTRNEKLGYKVREAQLEKIPYILVIGDKEVEARGVNVRLRKGDNLGLKTLDEVVDIIRADCE 631          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIAD (Threonyl-tRNA synthetase OS=Acinetobacter sp. (strain ADP1) GN=thrS PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 91/177 (51.41%), Postives = 123/177 (69.49%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  ++D LGR WQC TIQ DFNLP R D  +V  ++E+ +P+M+HRA+LGS ERF G+LIEHYAG  P WL+P+QA V+ +TD+Q E C +V+ KLK NG+RA      E++   IR    ++IP + V+G +EV+  TV VR+R G  LGTM +D F+  +KSA   R
Sbjct:  458 GAFYGPKIEFSLKDCLGRVWQCGTIQCDFNLPIRLDASFVTEDNERDQPVMLHRAILGSFERFIGILIEHYAGFMPPWLAPVQACVMNITDSQAEACQQVVAKLKENGLRAISDLRNEKIGFKIRERTLERIPYLLVLGDREVEEGTVNVRTRSGKNLGTMSIDAFVDLVKSAVAER 634          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SYMTH (Threonyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 90/172 (52.33%), Postives = 123/172 (71.51%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAE-ICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GAFYGPK+D  + DALGRKWQC+T+Q+DF LP +FD+ Y+  + ++ RP+MIHRA++G+LERF G+L EHYAG+FPLW++P+QARVLP+TD    Y  EV+ KL+  G+R E     E++   IR AE  KIP + VVG KE +A  V VR R   +LG M + DF++  +S
Sbjct:  460 GAFYGPKLDFDVTDALGRKWQCATVQLDFQLPIKFDLTYIGEDGKEHRPVMIHRAIMGTLERFIGILTEHYAGNFPLWMAPVQARVLPITDRHHAYAGEVVAKLQEAGLRVEGDYRNEKVGYKIREAELLKIPFILVVGDKEAEAGAVAVRRRGMKDLGPMPLADFLALAQS 631          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_NITOC (Threonyl-tRNA synthetase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 92/171 (53.80%), Postives = 123/171 (71.93%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRI 512
            GGAFYGPKID+KIEDA+GRKWQCST+Q+DFNLP+RF + YV  +  + RPIMIHRAVLGSLERFFGVLIEHY G FP WL+P+Q  V+ +TD Q  Y  +V + ++  G R+ +    E++   IR    ++IP + V+G +EV  QTV VR+R+  +LG M +D F+  +
Sbjct:  459 GGAFYGPKIDIKIEDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGARHRPIMIHRAVLGSLERFFGVLIEHYEGKFPPWLAPVQVVVMSITDRQEGYARQVEEAMRNKGFRSLLDLRNEKIGFKIREHILRRIPYLLVIGDREVANQTVAVRTRYSQDLGAMSLDAFMEHL 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_NAUPA (Threonyl-tRNA synthetase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 90/176 (51.14%), Postives = 126/176 (71.59%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATE 527
            GGAFYGPKID+KI DA+GRKWQC TIQVDFNLP+RFDI YVD N+E+ RP+MIHRA++GS ERF  +L EHYAG+FP +++PI+A  +P+ ++ +EY  ++ K+L    I  EI    + L K IRNAEK+++  + ++G +EV+  TV +R R   E   M   +F+  IK+ +E
Sbjct:  433 GGAFYGPKIDIKITDAIGRKWQCGTIQVDFNLPERFDITYVDENNERVRPVMIHRAIIGSFERFIAILTEHYAGEFPTFIAPIKAIFVPIAESHVEYAKKLQKELLEADINTEIFASNDSLNKRIRNAEKRRVGYVVIIGDEEVETGTVAIRDRKKREQYKMTKGEFVEMIKNLSE 608          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_COLP3 (Threonyl-tRNA synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 88/177 (49.72%), Postives = 124/177 (70.06%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+  + D LGR WQC T+Q+DF LP+R    YV  ++E+  P+MIHRA+LGSLERF G+LIE + G FP WLSPIQ  ++ +TD Q  YC +V+KKLK NG RA+I    E++   IR    +++P + VVG KE+++  ++VR+R G +LG M VDDFI+++    ++R
Sbjct:  459 GAFYGPKIEFTLMDCLGRAWQCGTVQLDFALPERLGATYVGEDNERYTPVMIHRAILGSLERFIGILIEEFTGKFPTWLSPIQTTIMNITDKQAPYCEKVVKKLKENGFRAKIDLRNEKIGFKIREHTLKRVPYLLVVGDKEMESGEISVRTRSGEDLGKMSVDDFIAKLSDEVKSR 635          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_ACIF5 (Threonyl-tRNA synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=thrS PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.228e-48
Identity = 92/165 (55.76%), Postives = 120/165 (72.73%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVD 494
            GGAFYGPKIDLKI+DA+GRKWQCST+Q+DFNLP+RF + YV  +  +K PIM+HRA+ GS+ERFFGVLIEHY G FP+WL+P+QA VLP+++   EY   V   L   GIRAE     E++   IR    +++P + VVG +E +A TV VR R G +LGT+ +D
Sbjct:  459 GGAFYGPKIDLKIQDAIGRKWQCSTVQLDFNLPERFAMEYVAEDGARKVPIMVHRAIFGSIERFFGVLIEHYEGKFPVWLAPVQAVVLPISEHYSEYAESVSDVLVKRGIRAETDLRNEKIGYKIRAHTLRRVPYLLVVGEREKEAGTVAVRDRNGQDLGTLSID 623          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CLOK13.813e-4948.02Threonyl-tRNA synthetase OS=Clostridium kluyveri (... [more]
SYT_NATTJ4.980e-4950.29Threonyl-tRNA synthetase OS=Natranaerobius thermop... [more]
SYT_GEOSM8.495e-4952.27Threonyl-tRNA synthetase OS=Geobacter sp. (strain ... [more]
SYT_DESDG1.893e-4851.43Threonyl-tRNA synthetase OS=Desulfovibrio desulfur... [more]
SYT_ACIAD2.472e-4851.41Threonyl-tRNA synthetase OS=Acinetobacter sp. (str... [more]
SYT_SYMTH3.228e-4852.33Threonyl-tRNA synthetase OS=Symbiobacterium thermo... [more]
SYT_NITOC3.228e-4853.80Threonyl-tRNA synthetase OS=Nitrosococcus oceani (... [more]
SYT_NAUPA3.228e-4851.14Threonyl-tRNA synthetase OS=Nautilia profundicola ... [more]
SYT_COLP33.228e-4849.72Threonyl-tRNA synthetase OS=Colwellia psychrerythr... [more]
SYT_ACIF53.228e-4855.76Threonyl-tRNA synthetase OS=Acidithiobacillus ferr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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