EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CHLTB (Threonyl-tRNA synthetase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKID+ ++DA+ R WQC TIQ+D  LP+RFD+ Y ++  EK  PIM+HRA+ GS+ERF G+LIEH+ G FPLWLSP   R++ V D       E+ K     GI   +    E + K IRNA+  ++  M  +G KE++   + VR+R    L  + V+ F
Sbjct:  453 GAFYGPKIDIHVKDAINRTWQCGTIQLDMFLPERFDLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVADRHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVRTRDNRVLNDIAVEQF 618          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CHLTA (Threonyl-tRNA synthetase OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKID+ ++DA+ R WQC TIQ+D  LP+RFD+ Y ++  EK  PIM+HRA+ GS+ERF G+LIEH+ G FPLWLSP   R++ V D       E+ K     GI   +    E + K IRNA+  ++  M  +G KE++   + VR+R    L  + V+ F
Sbjct:  453 GAFYGPKIDIHVKDAINRTWQCGTIQLDMFLPERFDLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVADRHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVRTRDNRVLNDIAVEQF 618          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CHLT2 (Threonyl-tRNA synthetase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 74/166 (44.58%), Postives = 103/166 (62.05%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKID+ ++DA+ R WQC TIQ+D  LP+RFD+ Y ++  EK  PIM+HRA+ GS+ERF G+LIEH+ G FPLWLSP   R++ V D       E+ K     GI   +    E + K IRNA+  ++  M  +G KE++   + VR+R    L  + V+ F
Sbjct:  453 GAFYGPKIDIHVKDAINRTWQCGTIQLDMFLPERFDLKYTNAQGEKSTPIMLHRALFGSIERFLGILIEHFKGRFPLWLSPEHVRIITVADRHEARAQELAKHFSQMGIIVSVDSSNESVSKKIRNAQNMQVNYMITIGDKELETHLLAVRTRDNRVLNDIAVEQF 618          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYTC_CAEEL (Threonyl-tRNA synthetase, cytoplasmic OS=Caenorhabditis elegans GN=trs-1 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.963e-37
Identity = 78/173 (45.09%), Postives = 112/173 (64.74%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI---CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GAFYGPKID+ I+DAL R +QC+TIQ+DF LP +FD+ Y D   EK+RP+MIHRAVLGS+ER   +L E Y G +P WLSP Q +++ V ++  +Y N+V K++   G   E    C G+ + K +R A+  +   + V+GAKE +  TV VR+R     G + +D  IS+ +
Sbjct:  537 GAFYGPKIDITIQDALKRNFQCATIQLDFQLPNQFDLSYFDEKGEKQRPVMIHRAVLGSVERMTAILTESYGGKWPFWLSPRQCKIITVHESVRDYANDVKKQIFEAGFEIEYEENC-GDTMNKQVRKAQLAQFNFILVIGAKEKENGTVNVRTRDNAVRGEVALDKLISKFR 708          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_COXBU (Threonyl-tRNA synthetase OS=Coxiella burnetii GN=thrS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 73/178 (41.01%), Postives = 113/178 (63.48%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            GAFYGPKI+  + D LGR WQC T+QVDF++P+R    Y+  +  KK P+MIHRA+LGS ERF G+L+E  AG  PLWL+P+Q  V+ +TD Q +Y  + ++ L+  GIRA      E++   IR     ++P + V+G +EV  +T++VR+       T+ +++F  ++K+    R+
Sbjct:  458 GAFYGPKIEFSLRDCLGRIWQCGTVQVDFSVPERLGAHYIAEDGSKKPPVMIHRAILGSFERFLGILLEESAGKLPLWLAPVQVVVMNITDRQADYVGQTVENLQNLGIRAHSDLRNEKIGFKIREHTIARVPYLVVIGDREVADKTLSVRALEDEASTTITLEEFARQLKAEISQRS 635          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_BUCAT (Threonyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain Tuc7) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 74/171 (43.27%), Postives = 109/171 (63.74%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GAFYGPKI+  ++D+L R WQC TIQ+DF LP R    Y++  +EKK P++IHRA+LGS+ERF G+LIE  +G+ P WLSP+Q  ++ +TD    Y  E+ KK     IR E     E++   IR    ++IP + + G KE  ++ ++VR+R G   G + VD FI +++
Sbjct:  459 GAFYGPKIEFILQDSLDRNWQCGTIQLDFYLPLRLSSFYINEKNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSGYVKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMIDVDFFIKKLQ 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_BUCAI (Threonyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=thrS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 74/171 (43.27%), Postives = 109/171 (63.74%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GAFYGPKI+  ++D+L R WQC TIQ+DF LP R    Y++  +EKK P++IHRA+LGS+ERF G+LIE  +G+ P WLSP+Q  ++ +TD    Y  E+ KK     IR E     E++   IR    ++IP + + G KE  ++ ++VR+R G   G + VD FI +++
Sbjct:  459 GAFYGPKIEFILQDSLDRNWQCGTIQLDFYLPLRLSSFYINEKNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSGYVKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMIDVDFFIKKLQ 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_BUCA5 (Threonyl-tRNA synthetase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain 5A) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.564e-37
Identity = 74/171 (43.27%), Postives = 109/171 (63.74%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GAFYGPKI+  ++D+L R WQC TIQ+DF LP R    Y++  +EKK P++IHRA+LGS+ERF G+LIE  +G+ P WLSP+Q  ++ +TD    Y  E+ KK     IR E     E++   IR    ++IP + + G KE  ++ ++VR+R G   G + VD FI +++
Sbjct:  459 GAFYGPKIEFILQDSLDRNWQCGTIQLDFYLPLRLSSFYINEKNEKKVPVIIHRAILGSIERFIGILIEECSGNLPTWLSPVQVVIISITDISSGYVKELFKKFSDVNIRIECDLRNEKIGFKIREHTLRRIPYILICGEKESSSKKISVRNRQGHNFGMIDVDFFIKKLQ 629          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_WOLTR (Threonyl-tRNA synthetase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 71/152 (46.71%), Postives = 103/152 (67.76%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRS 458
            GAFYGPK++  ++DA+GR WQC T+QVDF LP+R    Y+ ++ +K  P+M+HRA+LG+ ERF G+LIEHYAG FPLWL+P Q  +L VT+    Y  E+   LK  G+R +     E++   IR     K+P++ +VG  EV ++TV+VR+
Sbjct:  457 GAFYGPKLEFILKDAIGRSWQCGTLQVDFILPERLGAFYIGADGQKYHPVMLHRAILGTFERFIGILIEHYAGKFPLWLAPTQLVILTVTNEADNYATEISNVLKEQGVRVKTDLTNEKVSYKIRLHSSNKVPILWIVGKNEVASKTVSVRN 608          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_STRZT (Threonyl-tRNA synthetase OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=thrS PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.348e-37
Identity = 77/178 (43.26%), Postives = 120/178 (67.42%), Query Frame = 3
Query:    9 AFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVT-DTQLEYCNEVIKKLKTNGIRAEIC-HGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENRT 536
            AFYGPK+D++I+ ALG++   STIQ+DF LP+RFD+ Y+ ++ E  RP+MIHR V+ ++ERF  +LIE+Y G FP WL+P Q  ++PV+ +  ++Y  EV KKL+  G+RA++    E++   IR ++  KIP   +VG KE++ +TV VR     E  T+ VD+F+  I +   N++
Sbjct:  466 AFYGPKLDIQIKTALGKEETLSTIQLDFLLPERFDLKYIGADGEDHRPVMIHRGVISTMERFTAILIENYKGAFPTWLAPHQVTLIPVSNEKHVDYAWEVAKKLRDRGVRADVDERNEKMQFKIRASQTSKIPYQLIVGDKEMEDETVNVRRYGQKETQTVSVDNFVQAILADIANKS 643          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_CHLTB1.963e-3744.58Threonyl-tRNA synthetase OS=Chlamydia trachomatis ... [more]
SYT_CHLTA1.963e-3744.58Threonyl-tRNA synthetase OS=Chlamydia trachomatis ... [more]
SYT_CHLT21.963e-3744.58Threonyl-tRNA synthetase OS=Chlamydia trachomatis ... [more]
SYTC_CAEEL1.963e-3745.09Threonyl-tRNA synthetase, cytoplasmic OS=Caenorhab... [more]
SYT_COXBU2.564e-3741.01Threonyl-tRNA synthetase OS=Coxiella burnetii GN=t... [more]
SYT_BUCAT2.564e-3743.27Threonyl-tRNA synthetase OS=Buchnera aphidicola su... [more]
SYT_BUCAI2.564e-3743.27Threonyl-tRNA synthetase OS=Buchnera aphidicola su... [more]
SYT_BUCA52.564e-3743.27Threonyl-tRNA synthetase OS=Buchnera aphidicola su... [more]
SYT_WOLTR3.348e-3746.71Threonyl-tRNA synthetase OS=Wolbachia sp. subsp. B... [more]
SYT_STRZT3.348e-3743.26Threonyl-tRNA synthetase OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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