EH406265

Overview
NameEH406265
Unique NameEH406265
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FRATW (Threonyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKI+  ++DA+GR WQC TIQ+DF++PQR    Y+D N EK+ P+M+HRA++GSLERF G+LIEHYAG+ PLWL+P+Q  V+ +++ Q +YC EV   L+ NGIRA++    E++   IR     ++P + ++G  E + + +T+R   G +LG M VDDF
Sbjct:  457 GAFYGPKIEFHLKDAIGRSWQCGTIQLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISNNQDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSGEDLGQMSVDDF 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FRATT (Threonyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKI+  ++DA+GR WQC TIQ+DF++PQR    Y+D N EK+ P+M+HRA++GSLERF G+LIEHYAG+ PLWL+P+Q  V+ +++ Q +YC EV   L+ NGIRA++    E++   IR     ++P + ++G  E + + +T+R   G +LG M VDDF
Sbjct:  457 GAFYGPKIEFHLKDAIGRSWQCGTIQLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISNNQDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSGEDLGQMSVDDF 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FRATM (Threonyl-tRNA synthetase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKI+  ++DA+GR WQC TIQ+DF++PQR    Y+D N EK+ P+M+HRA++GSLERF G+LIEHYAG+ PLWL+P+Q  V+ +++ Q +YC EV   L+ NGIRA++    E++   IR     ++P + ++G  E + + +T+R   G +LG M VDDF
Sbjct:  457 GAFYGPKIEFHLKDAIGRSWQCGTIQLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISNNQDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSGEDLGQMSVDDF 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_FRAT1 (Threonyl-tRNA synthetase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 81/166 (48.80%), Postives = 118/166 (71.08%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDF 500
            GAFYGPKI+  ++DA+GR WQC TIQ+DF++PQR    Y+D N EK+ P+M+HRA++GSLERF G+LIEHYAG+ PLWL+P+Q  V+ +++ Q +YC EV   L+ NGIRA++    E++   IR     ++P + ++G  E + + +T+R   G +LG M VDDF
Sbjct:  457 GAFYGPKIEFHLKDAIGRSWQCGTIQLDFSMPQRLGATYIDKNGEKQVPVMLHRAIVGSLERFIGMLIEHYAGNLPLWLAPVQVAVMGISNNQDDYCKEVFIMLEKNGIRAKLDLRNEKIGFKIREHTLLRVPYLVILGKNEQEQKIITIRKHSGEDLGQMSVDDF 622          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CARHZ (Threonyl-tRNA synthetase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.791e-46
Identity = 84/170 (49.41%), Postives = 115/170 (67.65%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRI 512
            GAFYGPKID  ++D LGR WQC TIQ+DF +P++FD+ Y+  + +K RP+MIHR V GS+ERF G+LIEHYAG FP+WLSP+Q RV+ V +   EY  E+ +KL   G+R E+    E +   IR  + QKIP + +VG KE++  +V VR R  G+LG     +FI  +
Sbjct:  457 GAFYGPKIDFHLKDCLGRTWQCGTIQLDFQMPEKFDLTYIGEDGQKHRPVMIHRVVFGSIERFIGILIEHYAGAFPVWLSPVQVRVITVAERHREYGQEIYQKLFNQGVRVELDDRNETIGYKIREGQMQKIPYLLIVGDKEIEQGSVAVRKRGVGDLGQKPFAEFIEEL 626          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_SULNB (Threonyl-tRNA synthetase OS=Sulfurovum sp. (strain NBC37-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 85/168 (50.60%), Postives = 119/168 (70.83%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEIC-HGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFI 503
            GGAFYGPKID+KI DA+GRKWQC TIQVDFNLP+RFD+ YV  ++ +KRP+M+HRA+LGS ERF G+L EHYAG+FP +++P Q   +P+++    Y   + KKL   GI +E+    + L K IR AEKQ++P + ++G +EV   TV +R+R   E   +  D+F+
Sbjct:  425 GGAFYGPKIDIKITDAIGRKWQCGTIQVDFNLPERFDVEYVAEDNSRKRPVMLHRAILGSFERFIGILTEHYAGEFPFFIAPTQVIFVPISEGHAGYAYGLKKKLMLEGIDSEVSDKNDSLNKRIRTAEKQRVPYVVIIGDEEVQNNTVAIRNRRTREQYNLTQDEFM 592          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_DESOH (Threonyl-tRNA synthetase OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 86/155 (55.48%), Postives = 116/155 (74.84%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFG 467
            GAFYGPKID+ I+DALGR WQC TIQ+D +LP+RFD+ Y+D+ SEK+RP+MIHR + GS+ERF G+LIEH+AG FPLWL+P QA +LP+ D  + Y  EV ++ +  GIR EI    E L K +R A+  KIPL+  +G KE +A+T++VR+  G
Sbjct:  453 GAFYGPKIDVHIKDALGRTWQCGTIQLDMSLPERFDLSYIDAGSEKQRPVMIHRVIYGSIERFLGILIEHFAGKFPLWLAPTQAVLLPLNDDMIPYAREVRQEFEQAGIRTEIDDRSESLNKKVRQAQIDKIPLIITLGGKEKEARTLSVRTLDG 607          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CELJU (Threonyl-tRNA synthetase OS=Cellvibrio japonicus (strain Ueda107) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 89/177 (50.28%), Postives = 121/177 (68.36%), Query Frame = 3
Query:    6 GAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRA-EICHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKSATENR 533
            GAFYGPKI+ +I+DALGR WQC TIQ+D+ LP+R D  YV  ++ +KRP+M+HRA+LGS ERF G+LIEHY G FP+WLSP+Q  V  +TD+Q EY   V K L+  GIR       E++   IR    Q++P + VVG KEV+ Q++ VR+R G +LG M +D FI+ + +    R
Sbjct:  459 GAFYGPKIEYQIKDALGRSWQCGTIQLDYVLPERLDAEYVADDNVRKRPVMLHRAILGSFERFLGILIEHYEGSFPVWLSPVQVVVANITDSQAEYVKRVEKALREQGIRVIADLRNEKIGFKIREHTIQRVPYLLVVGDKEVENQSLAVRTRDGKDLGVMPLDAFIAHLTADIARR 635          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMJ8 (Threonyl-tRNA synthetase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 87/172 (50.58%), Postives = 120/172 (69.77%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEICH-GERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIK 515
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP RF + Y DS++EKK+P+M+HRA+LGS ERF G+L EH AG+FP +++P    ++P+ +  + Y  E+ K+L    I +E+    E L K IR AEKQK+P++ V+G  EV  ++V +R R   E   + +D+FI  +K
Sbjct:  423 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRTAEKQKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLDEFIKLVK 594          
BLAST of EH406265 vs. ExPASy Swiss-Prot
Match: SYT_CAMHC (Threonyl-tRNA synthetase OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=thrS PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.148e-45
Identity = 86/173 (49.71%), Postives = 119/173 (68.79%), Query Frame = 3
Query:    3 GGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPQRFDIVYVDSNSEKKRPIMIHRAVLGSLERFFGVLIEHYAGDFPLWLSPIQARVLPVTDTQLEYCNEVIKKLKTNGIRAEI-CHGERLPKLIRNAEKQKIPLMAVVGAKEVDAQTVTVRSRFGGELGTMKVDDFISRIKS 518
            GGAFYGPKID+KI DAL RKWQC TIQVDFNLP RFD+ Y+D N+E+K+P+M+HRA+LGS ERF G+LIEH AG+ P +++P    ++P+ D  L Y  EV K L    + +EI    E L K IR AEK ++P++ V+G  EV  ++V +R R       + +D+F+  +K+
Sbjct:  430 GGAFYGPKIDIKITDALKRKWQCGTIQVDFNLPSRFDLGYIDENNERKQPVMLHRAILGSFERFIGILIEHTAGELPFFIAPTGVSIIPINDAHLNYAKEVQKALANLEVDSEILSKNETLNKRIRTAEKGRVPMILVLGDNEVKNRSVALRDRRARAQSNLSLDEFLEFVKN 602          
The following BLAST results are available for this feature:
BLAST of EH406265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_FRATW8.791e-4648.80Threonyl-tRNA synthetase OS=Francisella tularensis... [more]
SYT_FRATT8.791e-4648.80Threonyl-tRNA synthetase OS=Francisella tularensis... [more]
SYT_FRATM8.791e-4648.80Threonyl-tRNA synthetase OS=Francisella tularensis... [more]
SYT_FRAT18.791e-4648.80Threonyl-tRNA synthetase OS=Francisella tularensis... [more]
SYT_CARHZ8.791e-4649.41Threonyl-tRNA synthetase OS=Carboxydothermus hydro... [more]
SYT_SULNB1.148e-4550.60Threonyl-tRNA synthetase OS=Sulfurovum sp. (strain... [more]
SYT_DESOH1.148e-4555.48Threonyl-tRNA synthetase OS=Desulfococcus oleovora... [more]
SYT_CELJU1.148e-4550.28Threonyl-tRNA synthetase OS=Cellvibrio japonicus (... [more]
SYT_CAMJ81.148e-4550.58Threonyl-tRNA synthetase OS=Campylobacter jejuni s... [more]
SYT_CAMHC1.148e-4549.71Threonyl-tRNA synthetase OS=Campylobacter hominis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2BG09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406265 ID=EH406265; Name=EH406265; organism=Citrus clementina; type=EST; length=737bp
GTGGTGGTGCGTTTTATGGTCCAAAGATTGATCTTAAGATTGAGGATGCT
CTTGGAAGGAAGTGGCAGTGCTCAACCATACAGGTTGATTTCAATTTACC
ACAGCGATTTGACATTGTGTATGTTGACTCAAACTCAGAAAAGAAGCGTC
CCATCATGATCCACAGAGCAGTGCTTGGATCCTTGGAACGTTTCTTTGGA
GTTCTAATAGAGCATTATGCTGGGGATTTTCCTTTGTGGCTTTCTCCAAT
CCAAGCTCGTGTTTTACCAGTTACAGACACACAGCTTGAGTACTGTAATG
AGGTGATAAAAAAACTGAAAACTAATGGTATACGAGCTGAAATTTGCCAT
GGTGAGCGCCTGCCTAAGCTCATTAGAAATGCAGAGAAACAGAAAATTCC
ATTAATGGCAGTCGTTGGAGCTAAGGAAGTTGATGCACAAACTGTTACAG
TCAGATCTAGGTTTGGTGGAGAGCTTGGGACCATGAAAGTTGATGATTTT
ATCAGCAGAATCAAGTCTGCCACTGAAAACAGAACTACAATGTAAAGTTC
TTTGAAATTCTTAGACATGATATTTTTACAGGGATTTGAATACATACGAT
TTTCATTAGATAGCGACATTTTTTTACTCGTAAATTTATCTACTTGAGAA
ACTAAATATTTCTAATTTATGGTTGTAGCCTGTGTACAATAATTTTAGTT
TCTATTTTTCCTAATAAGCAAATAAATATCTGTTTAT
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