EH406293

Overview
NameEH406293
Unique NameEH406293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_METHJ (30S ribosomal protein S11P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 65/117 (55.56%), Postives = 85/117 (72.65%), Query Frame = 3
Query:  144 DGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 494
            +G+  +GVAHI+ASFN+T I VTDL+G ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  LH+K+RA            AQ+A+RALAR+GM+IG IEDVTP+P DS
Sbjct:    3 EGKEKWGVAHIYASFNNTIITVTDLTGAETITKSSGGMVVKQDRNESSPYAAMQMAGNVAQAAREKGIVGLHVKVRAPGRGKQRSPGPGAQAAIRALARAGMRIGLIEDVTPVPHDS 119          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_IGNH4 (30S ribosomal protein S11P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 494
            +GVAHIF+S N+TF+H+TD++G ET  R+TGGM VKAD ++ SPYAAM+AA   + +  E GITA+HIK+RA            AQ+A+RALARSG  IGRIEDVTP+P D+
Sbjct:    7 WGVAHIFSSPNNTFVHITDITGSETASRVTGGMVVKADHEKPSPYAAMIAAARAAQQAMERGITAIHIKVRAPGGYGPKTPGPGAQAAIRALARSGFIIGRIEDVTPLPHDT 118          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_HYPBU (30S ribosomal protein S11P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.687e-29
Identity = 64/113 (56.64%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAMLAA   + +  + GI ALHIK+RA            AQ+A+RALAR+G  IGRIEDVTP+P D+T
Sbjct:   10 WGVAHIYSSYNNTIIHITDLTGAETVARTSGGMVVKADREKPSPYAAMLAASRAAQQAMDRGIMALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPLPHDTT 122          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.510e-29
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            +GVAHI++S N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAM+AA   +    + GITALHIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSLNNTIIHITDLTGAETVSRWSGGMVVKADREKPSPYAAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS14_ENCCU (40S ribosomal protein S14 OS=Encephalitozoon cuniculi GN=RPS14 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.819e-29
Identity = 61/109 (55.96%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  165 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 491
            VAHI A+ NDTF+H+TD++G ET+ +ITGGM+VKA RDE SPYAAMLAAQDV+T+    G+  LH KLR             AQ+A+R L R+G+++GRIEDVTP+  D
Sbjct:   13 VAHIKATKNDTFVHITDMTGSETIAKITGGMRVKAQRDEGSPYAAMLAAQDVATKILGRGVKVLHFKLRGAGGVKPMALGPGAQTAIRTLIRAGLRVGRIEDVTPVARD 121          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_METLZ (30S ribosomal protein S11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps11p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.742e-28
Identity = 64/112 (57.14%), Postives = 83/112 (74.11%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 494
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK  R+ESSPYAAM  A +++   K+ GIT LHI++RA            AQ+A+RAL+R+GM+IGRIEDVTP+P DS
Sbjct:    8 WGIAHIFASFNNTIITVTDLSGAETICKSSGGMVVKQARNESSPYAAMQMAINIAQASKDKGITGLHIRVRAPGNGRQRSPGPGAQAAIRALSRAGMRIGRIEDVTPVPHDS 119          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_METTP (30S ribosomal protein S11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps11p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.881e-28
Identity = 62/116 (53.45%), Postives = 82/116 (70.69%), Query Frame = 3
Query:  150 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            E  + +AHI++SFN+T I +TDL+G ET+ +I+GGM VKA RDESSPY AM  A  V+ + K  GI  +H+K+RA            AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    3 EGKWAIAHIYSSFNNTLITITDLTGAETIAKISGGMVVKAARDESSPYTAMQMAMQVAEQAKAKGIVGVHVKVRAPGGNKQRSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 118          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_META3 (30S ribosomal protein S11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.068e-28
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            +GV HI+AS+N+T IHVTD++G ET+ +I+GGM VK  +DESSPYAAM  A  ++   +E GI  +HIK+RA            AQ+A+RALAR+G+KIGRIED TPIP D T
Sbjct:    5 WGVIHIYASYNNTIIHVTDITGAETIAKISGGMIVKNQKDESSPYAAMQGAFKIADMIREKGIDKVHIKVRATGGSKSKNPGPGAQAAIRALARAGIKIGRIEDATPIPHDGT 117          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_ARCFU (30S ribosomal protein S11P OS=Archaeoglobus fulgidus GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.068e-28
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            +G+AHI++S+N+T I +TD++G E + R++GGM VKADRDE +PY AM AA   +   KE GI  +HIK+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   10 WGIAHIYSSYNNTIITITDITGAEIIARVSGGMIVKADRDEGNPYTAMQAALRAAAIAKEKGIDGVHIKVRAPGGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 122          
BLAST of EH406293 vs. ExPASy Swiss-Prot
Match: RS11_UNCMA (30S ribosomal protein S11P OS=Uncultured methanogenic archaeon RC-I GN=rps11p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 62/113 (54.87%), Postives = 82/113 (72.57%), Query Frame = 3
Query:  159 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 497
            + +AHIF+SFN+T I VTDL+G ETL + +GGM VK DR+ESSPYAAM  A +V+ + K  GI  +HI++RA            AQ+A+R+LAR+G++IGRIEDVTPIP D T
Sbjct:    9 WAIAHIFSSFNNTIITVTDLTGAETLAKTSGGMVVKQDRNESSPYAAMQMAMNVAEQIKAKGIQGVHIRVRAPGGNHQRSPGPGAQAAIRSLARAGLRIGRIEDVTPIPHDGT 121          
The following BLAST results are available for this feature:
BLAST of EH406293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
RS11_METHJ2.687e-2955.5630S ribosomal protein S11P OS=Methanospirillum hun... [more]
RS11_IGNH42.687e-2957.1430S ribosomal protein S11P OS=Ignicoccus hospitali... [more]
RS11_HYPBU2.687e-2956.6430S ribosomal protein S11P OS=Hyperthermus butylic... [more]
RS11_STAMF3.510e-2957.5230S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS14_ENCCU7.819e-2955.9640S ribosomal protein S14 OS=Encephalitozoon cunic... [more]
RS11_METLZ1.742e-2857.1430S ribosomal protein S11P OS=Methanocorpusculum l... [more]
RS11_METTP3.881e-2853.4530S ribosomal protein S11P OS=Methanosaeta thermop... [more]
RS11_META35.068e-2854.8730S ribosomal protein S11P OS=Methanococcus aeolic... [more]
RS11_ARCFU5.068e-2853.9830S ribosomal protein S11P OS=Archaeoglobus fulgid... [more]
RS11_UNCMA1.129e-2754.8730S ribosomal protein S11P OS=Uncultured methanoge... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406293 ID=EH406293; Name=EH406293; organism=Citrus clementina; type=EST; length=755bp
GATTGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGC
CTTCTCAATCCTTCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAG
GGAGCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGG
AGCATGTCTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTT
ATTCATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGG
TGGTATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCTTACGCTGCCA
TGCTTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACT
GCTCTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACC
CGGTCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGA
AAATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGC
AGAAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTCTTGTTTGTCCG
ATTGTCTTGTTTGTCCGATTGTCTTGTTTTATGCGGGCATTCTGAATGGG
ACAGTTGTTCCTTAAAGTTAGTTGAAGTTACTTTTCAATTTTGGAACTAA
TTTATAGTTTTATCTGTCGCTATTAAAAGATTTTATTTTCCTGCTTTTTG
TAAAAACAATAGGTGGCCTTGAGAGCATATGGCATTACTGGTGTCTTGCA
TTGCG
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