FC868500 | Citrus Genome Database

Overview


Name	FC868500
Unique Name	FC868500
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	695

Libraries


Library Name	Type
AbioticL1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC868500_ssr8	microsatellite	FC868500_ssr8:8..23.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15173	contig	Ccv1_Contig15173:16..710.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_CHICK (14-3-3 protein gamma OS=Gallus gallus GN=YWHAG PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 1.264e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELGAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433Z_AEDAE (14-3-3 protein zeta OS=Aedes aegypti GN=14-3-3zeta PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 116/204 (56.86%), Postives = 149/204 (73.04%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            ++E  V  A+LAEQ+ERYD+M +AMK V +  VEL+ EERNL+SV YK+V+GARR+SWR++SSIEQK E+   +Q + R  EYR+RVE EL +IC ++L ++D+ LIP +++ ES VFY KMKGDYYRYLAE    + R    D S             ++ PTHPIRLGLALNFSVFYY  LNSP++AC LAKQAFD+AIAEL
Sbjct:    5 DKEELVQKAKLAEQSERYDDMAQAMKSVTETGVELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTESSARKQQLAR--EYRERVEKELREICYEVLGLLDKFLIPKASNPESKVFYLKMKGDYYRYLAEVATGETRNTVVDDSQAAYQDAFEISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQAFDDAIAEL 206

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_RAT (14-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_PONAB (14-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_MOUSE (14-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_HUMAN (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.650e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433G_BOVIN (14-3-3 protein gamma OS=Bos taurus GN=YWHAG PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.155e-59
Identity = 116/206 (56.31%), Postives = 147/206 (71.36%), Query Frame = 1

Query:   82 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIP--SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            +RE  V  ARLAEQAERYD+M  AMK V +L+  L+ EERNL+SV YK+V+GARR+SWR++SSIEQK  A GNE+ ++ ++ YR+++E EL  +C D+LS++D +LI   S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYY   N+PE+ACHLAK AFD+AIAEL
Sbjct:    3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQIESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAEL 208

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433B_PONAB (14-3-3 protein beta/alpha OS=Pongo abelii GN=YWHAB PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.155e-59
Identity = 117/207 (56.52%), Postives = 150/207 (72.46%), Query Frame = 1

Query:   73 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            M  ++   V  A+LAEQAERYD+M  AMK V +   EL+ EERNL+SV YK+V+GARR+SWR++SSIEQK E   NE+  +  KEYR+++E EL  ICND+L ++D++LIP++T  ES VFY KMKGDY+RYL+E    D+++    +S +           E+ PTHPIRLGLALNFSVFYY  LNSPE+AC LAK AFDEAIAEL
Sbjct:    1 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTER--NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAEL 205

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433B_MACFA (14-3-3 protein beta/alpha OS=Macaca fascicularis GN=YWHAB PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.155e-59
Identity = 117/207 (56.52%), Postives = 150/207 (72.46%), Query Frame = 1

Query:   73 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            M  ++   V  A+LAEQAERYD+M  AMK V +   EL+ EERNL+SV YK+V+GARR+SWR++SSIEQK E   NE+  +  KEYR+++E EL  ICND+L ++D++LIP++T  ES VFY KMKGDY+RYL+E    D+++    +S +           E+ PTHPIRLGLALNFSVFYY  LNSPE+AC LAK AFDEAIAEL
Sbjct:    1 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTER--NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAEL 205

[Close]

BLAST of FC868500 vs. ExPASy Swiss-Prot
Match: 1433B_HUMAN (14-3-3 protein beta/alpha OS=Homo sapiens GN=YWHAB PE=1 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 2.155e-59
Identity = 117/207 (56.52%), Postives = 150/207 (72.46%), Query Frame = 1

Query:   73 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKDVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYY*DLNSPERACHLAKQAFDEAIAEL 693
            M  ++   V  A+LAEQAERYD+M  AMK V +   EL+ EERNL+SV YK+V+GARR+SWR++SSIEQK E   NE+  +  KEYR+++E EL  ICND+L ++D++LIP++T  ES VFY KMKGDY+RYL+E    D+++    +S +           E+ PTHPIRLGLALNFSVFYY  LNSPE+AC LAK AFDEAIAEL
Sbjct:    1 MTMDKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHELSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTER--NEKKQQMGKEYREKIEAELQDICNDVLELLDKYLIPNATQPESKVFYLKMKGDYFRYLSEVASGDNKQTTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAEL 205

The following BLAST results are available for this feature:

BLAST of FC868500 vs. ExPASy Swiss-Prot

BLAST of FC868500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142


Match Name	E-value	Identity	Description
1433G_CHICK	1.264e-59	56.31	14-3-3 protein gamma OS=Gallus gallus GN=YWHAG PE=...	[more]
1433Z_AEDAE	1.650e-59	56.86	14-3-3 protein zeta OS=Aedes aegypti GN=14-3-3zeta...	[more]
1433G_RAT	1.650e-59	56.31	14-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag...	[more]
1433G_PONAB	1.650e-59	56.31	14-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2...	[more]
1433G_MOUSE	1.650e-59	56.31	14-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1...	[more]
1433G_HUMAN	1.650e-59	56.31	14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1...	[more]
1433G_BOVIN	2.155e-59	56.31	14-3-3 protein gamma OS=Bos taurus GN=YWHAG PE=1 S...	[more]
1433B_PONAB	2.155e-59	56.52	14-3-3 protein beta/alpha OS=Pongo abelii GN=YWHAB...	[more]
1433B_MACFA	2.155e-59	56.52	14-3-3 protein beta/alpha OS=Macaca fascicularis G...	[more]
1433B_HUMAN	2.155e-59	56.52	14-3-3 protein beta/alpha OS=Homo sapiens GN=YWHAB...	[more]

Pages

Properties


Property Name	Value
Genbank description	C31001B07EF AbioticL1 Citrus clementina cDNA clone C31001B07, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC868500 ID=FC868500; Name=FC868500; organism=Citrus clementina; type=EST; length=695bp
AAAGCTCAGAGAGAGAGAGAGAGCGAGAGAAGGAAGAGAGCTAGCGAGAG
AAAGAGTGAGTGACTGAACGAAATGGAGAAGGAGAGAGAGCATCATGTTT
ACTTGGCCAGACTTGCTGAGCAAGCCGAGAGATACGACGAGATGGTTGAA
GCCATGAAGAAAGTTGCCAAGTTGGATGTGGAACTGACTGTGGAGGAGAG
GAATCTGGTGTCTGTTGGGTACAAGGATGTGATTGGGGCAAGAAGAGCAT
CATGGAGGATTTTGTCTTCCATTGAACAGAAGGAGGAGGCCAAGGGTAAT
GAACAAAATGTGAAGAGGATTAAGGAATATAGGCAGAGGGTTGAAGATGA
GCTTGCAAAGATCTGTAATGATATATTGTCTGTCATTGATGAACACCTAA
TCCCATCCTCCACATCTGGAGAATCAACCGTGTTTTACTATAAGATGAAA
GGAGATTATTACCGTTACCTAGCTGAGTTCAAAGGTGCTGATGATCGTAA
GGAAGCTGCAGATCATTCACTTAAGGCTTACGAGGCTGCTACAGCTGCAG
CAGCCTCAGAGTTACCCCCAACTCATCCAATCAGACTTGGCCTGGCTCTT
AACTTTTCTGTTTTCTACTACTGAGATTTGAACTCACCTGAGAGGGCTTG
CCACCTGGCTAAACAAGCATTTGATGAGGCGATTGCTGAACTTGA