FC868508

Overview
NameFC868508
Unique NameFC868508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_CRYPV (Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.678e-51
Identity = 96/172 (55.81%), Postives = 127/172 (73.84%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            E +  F+A+ ++ DLLRGI+ YGFEKPSAIQQR + PI+ G D I QAQSGTGKT+   +   Q +D S    Q L+L+PTRELA Q +KV LA+GD+  ++ HACVGG SV +D+ KL+ GVH+V GTPGRV DM+ +  LR   +KL +LDE+DEMLSRGFK QI+D+++
Sbjct:   28 EIVECFEALNLEGDLLRGIFAYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQKIDYSLNACQVLLLAPTRELAQQIQKVALALGDYCELRCHACVGGTSVRDDMNKLKSGVHMVVGTPGRVFDMLDKGYLRVDNLKLFILDEADEMLSRGFKVQIHDIFK 199          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.498e-51
Identity = 98/184 (53.26%), Postives = 141/184 (76.63%), Query Frame = 3
Query:  129 KMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SRGFKDQIYDVY 671
            K+ F+T++ ++   +F++M +KDDLLRGIY YGFE PSAIQ RA+  II G DVIAQAQSGTGKT+   + + Q +D   +++QAL+LSPTRELA+Q  +VV  +GD++N+Q++A  GGK++ +D+ +++ +G  VVSGTPGRV DM KR  L TR +++L+LDE+DE+L  S GFK QIYD++
Sbjct:   10 KLKFKTSKKLKISPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYMNVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIF 193          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_LEIBR (Probable eukaryotic initiation factor 4A OS=Leishmania braziliensis GN=LbrM01_V2.0740 PE=3 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 2.961e-50
Identity = 100/178 (56.18%), Postives = 131/178 (73.60%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHAC---VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+ P  +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +V+  IG+F++  A  C   VGG  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSAKFCETFVGGTRVQDDLRKLQAGVVVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRF 198          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_LEIMA (Probable eukaryotic initiation factor 4A OS=Leishmania major GN=LMJ_0078 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 99/178 (55.62%), Postives = 131/178 (73.60%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHAC---VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+ P  +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +V+  IG+F++  +  C   VGG  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRF 198          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_LEIIN (Probable eukaryotic initiation factor 4A OS=Leishmania infantum GN=LinJ01.0780 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 99/178 (55.62%), Postives = 131/178 (73.60%), Query Frame = 3
Query:  153 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHAC---VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 677
            GV  I SFD M +  +LLRGIY YGFEKPS+IQQRA+ P  +G D+IAQAQSGTGKT   ++ + Q +D     +Q L+LSPTRELA QT +V+  IG+F++  +  C   VGG  V +D+RKL+ GV V  GTPGRV D+IKR  LRT ++++LVLDE+DEMLS+GF DQIY+++R+
Sbjct:   21 GVRPIPSFDDMPLHQNLLRGIYSYGFEKPSSIQQRAIAPFTRGGDIIAQAQSGTGKTGAFSIGLLQRLDFRHNLIQGLVLSPTRELALQTAEVISRIGEFLSNSSKFCETFVGGTRVQDDLRKLQAGVIVAVGTPGRVSDVIKRGALRTESLRVLVLDEADEMLSQGFADQIYEIFRF 198          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.125e-49
Identity = 89/170 (52.35%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            +  FD + +K +++RGI+ YG+E PSAIQQRA++PI +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + V+ +IG ++N+  HA +GG S+ +DI   + GV +V GTPGRV DMI+R+  RT  +K+ +LDE+DEMLS GFK+QIY+++R
Sbjct:   22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYFRTDKVKMFILDEADEMLSSGFKEQIYNIFR 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.274e-49
Identity = 89/170 (52.35%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            + SFD + +K +++RGI+ YG+E PSAIQQRA++PI +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + V+  IG ++N+  HA +GG S+ +DI   + GV +V GTPGRV DMI+R+  RT  +K+ ++DE+DEMLS GFK+QIY+++R
Sbjct:   21 VYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTDKVKMFIMDEADEMLSSGFKEQIYNIFR 190          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 88/170 (51.76%), Postives = 128/170 (75.29%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            +  FD + +K +++RGI+ YG+E PSAIQQRA++PI +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + V+ +IG ++N+  HA +GG S+ +DI     GV VV GTPGRV DMI+R+  +T  +K+ ++DE+DEMLS GFK+QIY+++R
Sbjct:   22 VYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYFKTEKVKMFIMDEADEMLSSGFKEQIYNIFR 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.276e-49
Identity = 88/170 (51.76%), Postives = 129/170 (75.88%), Query Frame = 3
Query:  165 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 674
            + +FD + +K +++RGI+ YG+E PSAIQQRA++PI +GRDV+AQAQSGTGKT+   ++  Q +D + +  QALIL+PTRELA Q + V+  IG ++N+  HA +GG S+ +DI   + GV +V GTPGRV DMI+R+  +T  +K+ +LDE+DEMLS GFK+QIY+++R
Sbjct:   22 VYTFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTDKVKMFILDEADEMLSSGFKEQIYNIFR 191          
BLAST of FC868508 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.293e-49
Identity = 90/171 (52.63%), Postives = 128/171 (74.85%), Query Frame = 3
Query:  159 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVVLAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 671
            + + SFD + +K++LLRGI+ YGF +PSAIQQRA++PII+G+DV+AQAQSGTGKT   ++   Q +D   +  Q LIL+PTRELA Q +KVV+A+   ++++ HAC+GG S+ ED   L  G  ++ GTPGRV DMI R+  +T  IK+ +LDE+DEMLS GFK+QIY+++
Sbjct:   19 KVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTDNIKMFILDEADEMLSTGFKEQIYNIF 189          
The following BLAST results are available for this feature:
BLAST of FC868508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A_CRYPV2.678e-5155.81Eukaryotic initiation factor 4A OS=Cryptosporidium... [more]
FAL1_VANPO3.498e-5153.26ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
IF4A_LEIBR2.961e-5056.18Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIMA6.597e-5055.62Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LEIIN6.597e-5055.62Probable eukaryotic initiation factor 4A OS=Leishm... [more]
IF4A_LODEL1.125e-4952.35ATP-dependent RNA helicase eIF4A OS=Lodderomyces e... [more]
IF4A_PICGU3.274e-4952.35ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_PICST4.276e-4951.76ATP-dependent RNA helicase eIF4A OS=Pichia stipiti... [more]
IF4A_DEBHA4.276e-4951.76ATP-dependent RNA helicase eIF4A OS=Debaryomyces h... [more]
IF4A_KLULA7.293e-4952.63ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]

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Properties
Property NameValue
Genbank descriptionC31001C05EF AbioticL1 Citrus clementina cDNA clone C31001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868508 ID=FC868508; Name=FC868508; organism=Citrus clementina; type=EST; length=677bp
GCTCACCTGGAAGAGGAAACTCTCATTGATTCTTTGATTTCGAAGAGTAA
TTGTTGCGAATTTCGTGCGAGATGGCGGCGGCGACGGCTATGCGGAGGAG
AGGAGGGGGCGGCGGAATGGATGACGACAAGATGGTGTTCGAAACAACGG
AAGGAGTGGAGGCAATCACGAGCTTCGACGCAATGGGAATAAAAGACGAT
CTGTTGCGTGGAATTTATCAGTACGGATTCGAGAAGCCATCGGCCATACA
ACAGAGGGCCGTTATGCCGATTATAAAGGGCCGTGATGTAATTGCACAGG
CCCAGTCTGGTACTGGCAAGACCTCTATGATTGCCCTAACTGTTTGCCAG
ACGGTCGATACTTCTAGCAGAGAGGTGCAGGCGTTGATTTTGTCACCTAC
GAGGGAGCTGGCGACGCAGACAGAGAAAGTGGTTTTGGCAATTGGTGATT
TTATTAACATACAAGCACATGCGTGTGTTGGAGGCAAAAGTGTCGGGGAA
GATATTAGGAAGTTAGAGCATGGAGTTCATGTGGTGTCTGGAACTCCGGG
TAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATTA
AATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAAG
GATCAAATTTATGATGTGTACCGTTAT
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